Stem-loop osa-MIR1319b

Accession

MI0019843

Description

Oryza sativa osa-MIR1319b precursor miRNA

Literature search

3 open access papers mention osa-MIR1319b
(3 sentences)

Sequence

10795 reads, 51.0 reads per million, 141 experiments

auaggugccgguuuuuuaaaaaaacccgacaccuUUAAUAUAUUAUAGGUGUCGGUAAauuaaaaaucggcaccuauaauaaAUUAUAGGUGUCGGUUUUuuuaaaaaccggcaccugu
((((((((((((((((.(((((((((.(((((((.((((.((((((((((((((((.........)))))))))))))))).)))).))))))))))))))))))))))))))))))))

Structure

                u         c       U    A                AAa 
auaggugccgguuuuu aaaaaaacc gacaccu UAAU UAUUAUAGGUGUCGGU   u
|||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||   u
uguccacggccaaaaa uuuUUUUGG CUGUGGA AUUA auaauauccacggcua   a
                -         -       U    a                aaa 

Annotation confidence Low

Genome context

3: 23399893-23400011 [+]

Mature osa-miR1319b-5p

• Accession: MIMAT0023298
• Description: Oryza sativa osa-miR1319b-5p mature miRNA
• Sequence: 35 - UUAAUAUAUUAUAGGUGUCGGUAA - 58
• Evidence: experimental ; Illumina [1]

Mature osa-miR1319b-3p

• Accession: MIMAT0056297
• Description: Oryza sativa osa-miR1319b-3p mature miRNA
• Sequence: 83 - AUUAUAGGUGUCGGUUUU - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207