Stem-loop osa-MIR5792

Accession

MI0019804

Description

Oryza sativa osa-MIR5792 precursor miRNA

Literature search

3 open access papers mention osa-MIR5792
(4 sentences)

Sequence

72897 reads, 383.0 reads per million, 79 experiments

cgucGAUGACAGCGGUGGUUCGGACAUCuucggcuuuguaccugcuuggcuuGAUGGCAUCAUCGUUCUUAUCGAUG
(((((((((.(((((((((.....((((...((((..((....))..)))).))))..))))))))).)))))))))

Structure

         C         UCGGA    uuc    uu  a 
cgucGAUGA AGCGGUGGU     CAUC   ggcu  gu c
||||||||| |||||||||     ||||   ||||  ||  
GUAGCUAUU UUGCUACUA     GUAG   ucgg  cg c
         C         ---CG    --u    uu  u 

Annotation confidence High

Genome context

10: 11842884-11842960 [+]

Mature osa-miR5792-5p

• Accession: MIMAT0023259
• Description: Oryza sativa osa-miR5792-5p mature miRNA
• Sequence: 5 - GAUGACAGCGGUGGUUCGGACAUC - 28
• Evidence: experimental ; Illumina [1]

Mature osa-miR5792-3p

• Accession: MIMAT0056264
• Description: Oryza sativa osa-miR5792-3p mature miRNA
• Sequence: 53 - GAUGGCAUCAUCGUUCUUAUCGAUG - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207