Stem-loop osa-MIR5829

Accession

MI0019848

Description

Oryza sativa osa-MIR5829 precursor miRNA

Sequence

1089 reads, 5.0 reads per million, 95 experiments

gagagcaauuAUCAGGACCAGUAGGCGAUGGUAAugugucagagucuucuucaacaaugucaauaggaugugcauagguagacacaucauucaauccuucauggucacuacuaccagauuuguuaucaaugucgcagcauguuugcuagucuauggcaagagagccauucguAUUACUGCCUGAGAAAAGCUCUU
((((((.....(((((..(((((.((((((((....(((((.((.((....(((..((((........(((((((.(((.((((.(((.............((((.......))))))).))))))).))).))))))))..)))..)).)).))))).....)))).))))..)))))))))).....))))))

Structure

      aauuA     AC     -G    -    -AAug     g  u  ucuu   ca    caauagga    -   a   a    c   auucaauccuuca    ca 
gagagc     UCAGG  CAGUA  GCGA UGGU     uguca ag cu    caa  augu        ugug cau ggu gaca auc             uggu  c
||||||     |||||  |||||  |||| ||||     ||||| || ||    |||  ||||        |||| ||| ||| |||| |||             ||||  u
UUCUCG     AGUCC  GUCAU  ugcu accg     acggu uc ga    guu  uacg        acgc gua cua uugu uag             acca  a
      AAAAG     --     UA    u    agaga     a  u  --uc   ug    --------    u   a   -    u   -------------    uc 

Annotation confidence Low

Genome context

6: 20149367-20149561 [+]

Mature osa-miR5829-5p

• Accession: MIMAT0023303
• Description: Oryza sativa osa-miR5829-5p mature miRNA
• Sequence: 11 - AUCAGGACCAGUAGGCGAUGGUAA - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5829-3p

• Accession: MIMAT0056302
• Description: Oryza sativa osa-miR5829-3p mature miRNA
• Sequence: 173 - AUUACUGCCUGAGAAAAGCUCUU - 195
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207