Stem-loop osa-MIR5804

Accession

MI0019820

Description

Oryza sativa osa-MIR5804 precursor miRNA

Sequence

719 reads, 7.0 reads per million, 80 experiments

gaucagauugcaUCGGCAUCUCUACUCUGCAGCcgcugccucugccgccucuuucauccgcuguccgugcgacggcaagagaguguugacagcggcUGCGAAGUAGAGAUGCCGACUugaucugagc
..((((((((..((((((((((((((.(((((((((((..((...((((((((......((((((.....))))))))))).)))..))))))))))))).))))))))))))))..))))))))..

Structure

ga        ca              C           cc  ugc   -     ucaucc      c 
  ucagauug  UCGGCAUCUCUACU UGCAGCcgcug  uc   cgc cucuu      gcuguc g
  ||||||||  |||||||||||||| |||||||||||  ||   ||| |||||      |||||| u
  agucuagu  AGCCGUAGAGAUGA GCGUcggcgac  ag   gug gagaa      cggcag g
cg        UC              A           --  -uu   a     ------      c 

Annotation confidence High

Genome context

4: 20810160-20810286 [-]

Mature osa-miR5804-5p

• Accession: MIMAT0056278
• Description: Oryza sativa osa-miR5804-5p mature miRNA
• Sequence: 13 - UCGGCAUCUCUACUCUGCAGC - 33
• Evidence: experimental ; unknown

Mature osa-miR5804-3p

• Accession: MIMAT0023275
• Description: Oryza sativa osa-miR5804-3p mature miRNA
• Sequence: 97 - UGCGAAGUAGAGAUGCCGACU - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207