miRBase entry: osa-MIR5790

Stem-loop osa-MIR5790


Accession
MI0019802
Description
Oryza sativa osa-MIR5790 precursor miRNA


Sequence

18340 reads, 85.0 reads per million, 127 experiments
AAGACGAUCCUAGCAGAGCUUCAUcuccacuccacagguaaaacUCAACUGGGGUAUAAGCCugaguccucuaacuucgucuu
(((((((...((((((.((((...(((((......((......))....)))))...)))))))......)))...)))))))

Structure
       UCC   ------   A    CAU     cuccac  gu 
AAGACGA   UAG      CAG GCUU   cucca      ag  a
|||||||   |||      ||| ||||   |||||      ||   
uucugcu   auc      guC CGAA   GGGGU      Uc  a
       uca   uccuga   -    UAU     --CAAC  aa 


Annotation confidence Low
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Genome context
11: 7740052-7740134 [-]

Database links

Mature osa-miR5790-5p

Accession MIMAT0023257
Description Oryza sativa osa-miR5790-5p mature miRNA
Sequence 1 - AAGACGAUCCUAGCAGAGCUUCAU - 24
Evidence experimental
Illumina [1]

Mature osa-miR5790-3p

Accession MIMAT0056262
Description Oryza sativa osa-miR5790-3p mature miRNA
Sequence 45 - UCAACUGGGGUAUAAGCC - 62
Evidence experimental
unknown

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207