Stem-loop osa-MIR812p

Accession

MI0019799

Description

Oryza sativa osa-MIR812p precursor miRNA

Literature search

9 open access papers mention osa-MIR812p
(16 sentences)

Sequence

87517 reads, 352.0 reads per million, 142 experiments

ccuauuuuaagugcagccaugaUUUUCCGUGCACAACUUUAAucguccguuuuacuugaauuuuuuuugaaaaaaaugaaaaaguaagucacguauaaaguacuauucauauuuuaucaucccauaacaauaaaaaugcaaauuauaaaaaaaauucaaauaaGACGGACGAUUAAAGUUGGGCAUGaaaacuuaugguugcacuuaaaauggg
((((((((((((((((((((((.(((.(((((.(((((((((((((((((((((.((((((((((((((......((((.((((((.(....((((...))))....).)))))).))))..............(((....))).)))))))))))))).))))))))))))))))))))).))))).))).))))))))))))))))))))))

Structure

                      U   C     A                     c              -------------------aaaaaa    a      a ucac    a 
ccuauuuuaagugcagccauga UUU CGUGC CAACUUUAAucguccguuuua uugaauuuuuuuug                         auga aaagua g    guau  
|||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||                         |||| |||||| |    |||| a
ggguaaaauucacguugguauu aaa GUACG GUUGAAAUUAGCAGGCAGaau aacuuaaaaaaaau                         uacu uuuuau c    caug  
                      c   a     G                     a              auuaaacguaaaaauaacaauaccc    a      a uuau    a 

Annotation confidence Low

Genome context

8: 25425998-25426211 [+]

Mature osa-miR812p-5p

• Accession: MIMAT0056259
• Description: Oryza sativa osa-miR812p-5p mature miRNA
• Sequence: 23 - UUUUCCGUGCACAACUUUAA - 42
• Evidence: experimental ; unknown

Mature osa-miR812p-3p

• Accession: MIMAT0023254
• Description: Oryza sativa osa-miR812p-3p mature miRNA
• Sequence: 164 - GACGGACGAUUAAAGUUGGGCAUG - 187
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207