miRBase entry: osa-MIR5789

Stem-loop osa-MIR5789


Accession
MI0019801
Description
Oryza sativa osa-MIR5789 precursor miRNA


Sequence

316 reads, 9.0 reads per million, 16 experiments
aauucauaccaaauggagACGAUCAGUACCAAAGGCUGGUGACUGAGCUUCGUUCGGUAUcgauu
...(((((((.(((((((.(..(((((((((.....)))).))))))))))))).))))).))..

Structure
aau  -     a       A GA     -    A 
   uc auacc aauggag C  UCAGU ACCA A
   || ||||| ||||||| |  ||||| |||| G
   ag UAUGG UUGCUUC G  AGUCA UGGU G
-uu  c     C       - --     G    C 


Annotation confidence High
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Genome context
6: 1801934-1801998 [-]

Database links

Mature osa-miR5789-5p

Accession MIMAT0056261
Description Oryza sativa osa-miR5789-5p mature miRNA
Sequence 19 - ACGAUCAGUACCAAAGGCUGGUG - 41
Evidence experimental
unknown

Mature osa-miR5789-3p

Accession MIMAT0023256
Description Oryza sativa osa-miR5789-3p mature miRNA
Sequence 40 - UGACUGAGCUUCGUUCGGUAU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207