Stem-loop osa-MIR5814

Accession

MI0019831

Description

Oryza sativa osa-MIR5814 precursor miRNA

Sequence

55270 reads, 184.0 reads per million, 142 experiments

ggcuacugguAAUCAAGUUAGGAACCAUGCAAGUuguuuaugaguugugcccucugugccuagcgccauagaugacUUGCAAGAUUUCUAACUUGAGUGCcagugucc
(((.(((((((.((((((((((((.(.(((((((((((((((.((((.((.......)).))))..))))))))))))))).).)))))))))))).)))))))))).

Structure

-   u       A            C A               -a    u  cc 
 ggc acugguA UCAAGUUAGGAA C UGCAAGUuguuuaug  guug gc  u
 ||| ||||||| |||||||||||| | |||||||||||||||  |||| ||  c
 cug ugacCGU AGUUCAAUCUUU G ACGUUcaguagauac  cgau cg  u
c   -       G            A A               cg    c  ug 

Annotation confidence High

Genome context

6: 26661349-26661456 [-]

Mature osa-miR5814-5p

• Accession: MIMAT0023286
• Description: Oryza sativa osa-miR5814-5p mature miRNA
• Sequence: 11 - AAUCAAGUUAGGAACCAUGCAAGU - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5814-3p

• Accession: MIMAT0056288
• Description: Oryza sativa osa-miR5814-3p mature miRNA
• Sequence: 77 - UUGCAAGAUUUCUAACUUGAGUGC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207