Stem-loop osa-MIR5817

Accession

MI0019835

Description

Oryza sativa osa-MIR5817 precursor miRNA

Literature search

1 open access papers mention osa-MIR5817
(1 sentences)

Sequence

6547 reads, 23.0 reads per million, 135 experiments

aacuauuugcAUCGAAUUUGAAAGAAAAAGGUAUacgagaggauauccccuugagggauuagaauccacucccuauaagcucuaauggauuaagguuguguucguuuguagagcuuuacaacuuuccacucucAUUUUCCGUGCACAUGCUU
...(((.(((((.(((..(((.((...(((((....(((.(((((((((.....)))))....)))).))).....((((((((((((((.........))))))...))))))))....)))))...)).)))..))).))))).)))...

Structure

aac   u     C   UU   A  AAA     AUacgagaggauauccccuugagggauuagaauccacucccuau        ---      uaa 
   uau ugcAU GAA  UGA AG   AAGGU                                            aagcucua   auggau   g
   ||| ||||| |||  ||| ||   |||||                                            ||||||||   ||||||   g
   GUA ACGUG CUU  Acu uc   uuuca                                            uucgagau   ugcuug   u
UUC   C     C   UU   c  acc     ----------------------------------------acau        guu      ugu 

Annotation confidence Low

Genome context

1: 5990125-5990276 [+]

Mature osa-miR5817-5p

• Accession: MIMAT0023290
• Description: Oryza sativa osa-miR5817-5p mature miRNA
• Sequence: 11 - AUCGAAUUUGAAAGAAAAAGGUAU - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5817-3p

• Accession: MIMAT0056291
• Description: Oryza sativa osa-miR5817-3p mature miRNA
• Sequence: 134 - AUUUUCCGUGCACAUGCUU - 152
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207