Stem-loop osa-MIR5828

Accession

MI0019847

Description

Oryza sativa osa-MIR5828 precursor miRNA

Literature search

1 open access papers mention osa-MIR5828
(1 sentences)

Sequence

899 reads, 10.0 reads per million, 89 experiments

aaguaacuugUUACGGCAUUAAAAGUAAAUCuauuguggguuuagaaacauaagucuauuuggaaauuaaccccacaauggauuuacuUCUAAUGUUGUGACAAGUUACUU
(((((((((((((((((((((.((((((((((((((((((.((((...((..........))....)))).)))))))))))))))))).)))))))))))))))))))))

Structure

                     A                  u    -aaa  uaag 
aaguaacuugUUACGGCAUUA AAGUAAAUCuauuguggg uuag    ca    u
||||||||||||||||||||| |||||||||||||||||| ||||    ||     
UUCAUUGAACAGUGUUGUAAU Uucauuuagguaacaccc aauu    gu    c
                     C                  c    aaag  uuau 

Annotation confidence Low

Genome context

6: 16015691-16015801 [+]

Mature osa-miR5828-5p

• Accession: MIMAT0023302
• Description: Oryza sativa osa-miR5828-5p mature miRNA
• Sequence: 11 - UUACGGCAUUAAAAGUAAAUC - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5828-3p

• Accession: MIMAT0056301
• Description: Oryza sativa osa-miR5828-3p mature miRNA
• Sequence: 89 - UCUAAUGUUGUGACAAGUUACUU - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207