Stem-loop osa-MIR5835

Accession

MI0019855

Description

Oryza sativa osa-MIR5835 precursor miRNA

Literature search

1 open access papers mention osa-MIR5835
(3 sentences)

Sequence

7860 reads, 27.0 reads per million, 139 experiments

uacaaguuguACGAAACCAUAGGGAUUUUGGCAUgugacauauauaauauuaguauuauguauuaugguucuaaaauuucacaaaaccacaaacguuaaccaauuuuacauacuuccauacuaauaaauuucagaugugauuauagaacacaaaagugugauagauuaaaguaaaaaugauguAUAGUGUGGUUUUGUGAAACUugguuaugugccacaugguaaaacccuagugguuuuugugcaaaaguuuacucuugg
..((((((((((((((((((((((.(((((.((((((..((((((((((....))))))))))..(((((..............)))))...((((.(((((((((((((.....(((((((((((.((((......(((((.((..((((....))))..)))))))......))))..))).))))))))...))))))).))))))))))..)))))).))))))))).)))).)))))))))).........)))).

Structure

ua    ---------          -    -    A     G      acauauauaauauuaguauuauguauuaugguucuaaaauuucacaaaaccacaa    u      -       uacuu        -   -a    cagaug     a  ga    a 
  caag         uuguACGAAA CCAU AGGG UUUUG CAUgug                                                       acgu aaccaa uuuuaca     ccauacua aua  auuu      ugauu ua  acac a
  ||||         |||||||||| |||| |||| ||||| ||||||                                                       |||| |||||| |||||||     |||||||| |||  ||||      ||||| ||  ||||  
  guuc         aacguguuuu ggug uccc aaaau guacac                                                       ugua uugguU AAAGUGU     GGUGUGAU ugu  uaaa      auuag au  ugug a
-g    ucauuugaa          u    a    -     g      -----------------------------------------------------cg    -      C       --UUU        A   ag    aaugaa     -  ag    a 

Annotation confidence Low

Genome context

6: 19306710-19306970 [-]

Mature osa-miR5835-5p

• Accession: MIMAT0023310
• Description: Oryza sativa osa-miR5835-5p mature miRNA
• Sequence: 11 - ACGAAACCAUAGGGAUUUUGGCAU - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5835-3p

• Accession: MIMAT0056308
• Description: Oryza sativa osa-miR5835-3p mature miRNA
• Sequence: 184 - AUAGUGUGGUUUUGUGAAACU - 204
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207