Stem-loop osa-MIR2873c

Accession

MI0019856

Description

Oryza sativa osa-MIR2873c precursor miRNA

Literature search

2 open access papers mention osa-MIR2873c
(2 sentences)

Sequence

9400 reads, 41.0 reads per million, 138 experiments

uuaccaaaacucaacuuuauaugggaguaaaaaaaggauaAAUUUCGGGUGAAUAGUGacaggguauuauucauuugaaauuuguuauuuuuguuucuauCAAAUGAAGUUGAGUUUGGACa
...(((((.((((((((((((((((((((((((...((((((((((((((((((((((......)))))))))))))))))))))).)))))))))))))...))))))))))))))))...

Structure

uua     a           ---             aag                      ac 
   ccaaa cucaacuuuau   augggaguaaaaa   gauaAAUUUCGGGUGAAUAGUG  a
   ||||| |||||||||||   |||||||||||||   ||||||||||||||||||||||   
   GGUUU GAGUUGAAGUA   uaucuuuguuuuu   uuguuuaaaguuuacuuauuau  g
aCA     -           AAC             --a                      gg 

Annotation confidence Low

Genome context

7: 27503433-27503554 [+]

Mature osa-miR2873c-5p

• Accession: MIMAT0056309
• Description: Oryza sativa osa-miR2873c-5p mature miRNA
• Sequence: 41 - AAUUUCGGGUGAAUAGUG - 58
• Evidence: experimental ; unknown

Mature osa-miR2873c-3p

• Accession: MIMAT0023311
• Description: Oryza sativa osa-miR2873c-3p mature miRNA
• Sequence: 101 - CAAAUGAAGUUGAGUUUGGAC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207