Stem-loop osa-MIR5827

Accession

MI0019846

Description

Oryza sativa osa-MIR5827 precursor miRNA

Literature search

1 open access papers mention osa-MIR5827
(1 sentences)

Sequence

12048 reads, 80.0 reads per million, 109 experiments

uauuuucaccUUUGUUGCAAUUUGGACUACCcuaaaccacuucuucagcacaucaauuccagcccaccggugaacuccuccaccucuuugcagauucauaucuuugcuggaggagaggccagacauggcuagggaagagaguugaggUGGUCCAAAGUGCAACAAAGUaaaaaaua
((((((...((((((((((.(((((((((((.....................((((((((..(((.........((((((((.......(((((........))))))))))))).(((((....))))).)))..).)))))))))))))))))).))))))))))...))))))

Structure

      cac          A           cuaaaccacuucuucagcaca       - ag   -------accggugaa        ccucuuu     uuc 
uauuuu   cUUUGUUGCA UUUGGACUACC                     ucaauuc c  ccc                cuccucca       gcaga   a
||||||   |||||||||| |||||||||||                     ||||||| |  |||                ||||||||       |||||    
auaaaa   GAAACAACGU AAACCUGGUgg                     aguugag g  ggg                gaggaggu       cguuu   u
      aaU          G           ---------------------       a aa   aucgguacagaccgga        -------     cua 

Annotation confidence High

Genome context

4: 30081902-30082077 [-]

Mature osa-miR5827-5p

• Accession: MIMAT0023301
• Description: Oryza sativa osa-miR5827-5p mature miRNA
• Sequence: 11 - UUUGUUGCAAUUUGGACUACC - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5827-3p

• Accession: MIMAT0056300
• Description: Oryza sativa osa-miR5827-3p mature miRNA
• Sequence: 148 - UGGUCCAAAGUGCAACAAAGU - 168
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207