Stem-loop osa-MIR5825

Accession

MI0019844

Description

Oryza sativa osa-MIR5825 precursor miRNA

Sequence

20395 reads, 69.0 reads per million, 135 experiments

gugcucccuacguuuuaagguuAUAUGACGUUUUAACUUUGGUUAAaaccaaacuacuucaaauuuaacuuaguuuauauaccaaauuaguuuuaugaaaucaauagcugaauauauuuuuauaauaaauuuauguugaguugaaaauauuauuauuguuuucuacaaacuugaauuaguuugauuuugaccaaaaucAAAACAUCUGAUAACCUGAAACGGgucgguccac
(((..((...(((((((.((((((..((.(((((...(((((((((((.(((((((.(((((((..((((.(((((.......)))))))))..)).........((((.((((((..((((...))))..)))))).))))(((((((.......))))))).......))))).))))))).)))))))))))...))))).))..)))))))))))))....))..)))

Structure

   cu  -cua       a      AU  C     AAC           c       c     auuuaacuuaguuuauauaccaaauuaguuuuaugaaaucaau    g      uu    u 
gug  cc    cguuuua gguuAU  GA GUUUU   UUUGGUUAAaa caaacua uucaa                                           agcu aauaua  uuua  
|||  ||    ||||||| ||||||  || |||||   ||||||||||| ||||||| |||||                                           |||| ||||||  |||| a
cac  gg    GCAAAGU CCAAUA  CU CAAAA   aaaccaguuuu guuugau aaguu                                           uuga uuguau  aaau  
   cu  cugG       -      GU  A     cua           a       u     ---------------caaacaucuuuuguuauuauuauaaaag    g      uu    a 

Annotation confidence Low

Genome context

5: 23591556-23591787 [-]

Mature osa-miR5825-5p

• Accession: MIMAT0056298
• Description: Oryza sativa osa-miR5825-5p mature miRNA
• Sequence: 23 - AUAUGACGUUUUAACUUUGGUUAA - 46
• Evidence: experimental ; unknown

Mature osa-miR5825-3p

• Accession: MIMAT0023299
• Description: Oryza sativa osa-miR5825-3p mature miRNA
• Sequence: 199 - AAAACAUCUGAUAACCUGAAACGG - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207