Stem-loop osa-MIR5796

Accession

MI0019809

Description

Oryza sativa osa-MIR5796 precursor miRNA

Literature search

3 open access papers mention osa-MIR5796
(5 sentences)

Sequence

3218 reads, 57.0 reads per million, 44 experiments

gaucggcaugggaggguuugggaguugaguuuggaCAAUUACAUGAGAGUCACCUUccucauggguagauaccuguuucccaagcuaucauagggguugcaggagcugccauugcacagggagucuuuggacaggauuguUCAUUCAGGAUUGAAGCCGCCaaugccagca
....(((((.((..(((((.((..(((((..(((((((((....((((.((.(((....((..(((((.(.(((((..(((............)))..)))))).)))))..))...))))).)))).......))))))))))))))..)).))))).)).)))))....

Structure

gauc     g  ag     g  ag     uu         ---ACAU    G  A   Uccu  ug     a a     uu   aagcu 
    ggcau gg  gguuu gg  uugag  uggaCAAUU       GAGA UC CCU    ca  gguag u ccugu  ccc     a
    ||||| ||  ||||| ||  |||||  |||||||||       |||| || |||    ||  ||||| | |||||  |||      
    ccgua CC  CCGAA UU  GACUU  ACUuguuag       uucu ag gga    gu  ccguc a ggacg  ggg     u
acga     a  -G     G  AG     --         gacaggu    g  -   -cac  ua     g -     uu   gauac 

Annotation confidence Low

Genome context

8: 2672521-2672691 [-]

Mature osa-miR5796-5p

• Accession: MIMAT0056269
• Description: Oryza sativa osa-miR5796-5p mature miRNA
• Sequence: 36 - CAAUUACAUGAGAGUCACCUU - 56
• Evidence: experimental ; unknown

Mature osa-miR5796-3p

• Accession: MIMAT0023264
• Description: Oryza sativa osa-miR5796-3p mature miRNA
• Sequence: 141 - UCAUUCAGGAUUGAAGCCGCC - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207