Stem-loop osa-MIR5836

Accession

MI0019857

Description

Oryza sativa osa-MIR5836 precursor miRNA

Literature search

2 open access papers mention osa-MIR5836
(2 sentences)

Sequence

503 reads, 22.0 reads per million, 22 experiments

uuacgaggcaUGAGCAGCCGGACCAUGGGAUauucaggcacuccugguguuucacaUUCCUAAUGGCCUCUACUGUagcugccauguaa
.((((.((((...((((..((.((((((((.....(((((((...))))))).....)))).))))))....))))...)))).)))).

Structure

u    a    UGA    --CC  A    -    Uauuc       c 
 uacg ggca   GCAG    GG CCAU GGGA     aggcacu  
 |||| ||||   ||||    || |||| ||||     ||||||| c
 augu ccgu   UGUC    CC GGUA UCCU     uuugugg  
a    a    cga    AUCU  -    A    Uacac       u 

Annotation confidence Not enough data

Genome context

6: 17701867-17701955 [-]

Mature osa-miR5836-5p

• Accession: MIMAT0023312
• Description: Oryza sativa osa-miR5836-5p mature miRNA
• Sequence: 11 - UGAGCAGCCGGACCAUGGGAU - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5836-3p

• Accession: MIMAT0056310
• Description: Oryza sativa osa-miR5836-3p mature miRNA
• Sequence: 57 - UUCCUAAUGGCCUCUACUGU - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207