Stem-loop osa-MIR5793

Accession

MI0019805

Description

Oryza sativa osa-MIR5793 precursor miRNA

Literature search

2 open access papers mention osa-MIR5793
(6 sentences)

Sequence

14111 reads, 126.0 reads per million, 51 experiments

accCGAGGACGAGAUACAGUGCAGcaucgcgggacggaaaucuucCUUUGCGUGUACCUUCUCUUGUcccauccuggu
(((.((((((((((....(((((....((((((..((((...)))))))))))))))....))))))))..))..)))

Structure

   -C  --        UACA     Gcau      ac    a 
acc  GA  GGACGAGA    GUGCA    cgcggg  ggaa  
|||  ||  ||||||||    |||||    ||||||  |||| u
ugg  cu  ccUGUUCU    CAUGU    GCGUUU  Ccuu  
   uc  ac        CUUC     ----      --    c 

Annotation confidence Medium

Genome context

11: 24288999-24289076 [+]

Mature osa-miR5793-5p

• Accession: MIMAT0023260
• Description: Oryza sativa osa-miR5793-5p mature miRNA
• Sequence: 4 - CGAGGACGAGAUACAGUGCAG - 24
• Evidence: experimental ; Illumina [1]

Mature osa-miR5793-3p

• Accession: MIMAT0056265
• Description: Oryza sativa osa-miR5793-3p mature miRNA
• Sequence: 46 - CUUUGCGUGUACCUUCUCUUGU - 67
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207