Stem-loop osa-MIR5805

Accession

MI0019821

Description

Oryza sativa osa-MIR5805 precursor miRNA

Literature search

1 open access papers mention osa-MIR5805
(1 sentences)

Sequence

12614 reads, 42.0 reads per million, 137 experiments

cgacaucagcACGAGUGAUGGCGGCGUAUACCUGcgggaaggcggcggcggcaugaagguacaggggcaagcagcugcgcggcgcagccugcuggagcaccuccaagacguugcggcacuuguucugcucaauacacaagcaaaauaaugaggauagcuagcguuuggggaugggccaggcggccaacaugacgagguaaugauggagcugcuugugcgccggcagaaguagugggacugcauggauauggccacacagacacccaguuggccugcaggcucuggcaucgaaguucuucucgcgccccgggagcacugcgcugcagcugcuugccccauccgccuccaccacgccgucggaugucgccucugcaggugcACGCCGUCGCCACCCGUGUUGAUGcuga
((.((((((((((.(((.(((((((((.(((((((((..(((((((((((((.((.((((...(((((((((((((((..(((((((.((.((((.....(((((.((((((((....((((((.((((.........))))....))))))....)).)))))))))))..(((((..(((((((((...................(((((((.(((....))).)))))))(((.(((..(((......)))..)))...))).))))))).)).))))).(((..(((........))).))))))).))..))))))))))))))))))))))....))))....)).))))))....)))))))))))))))).))))))))).))).)))))))))).)).

Structure

-  a          A   A         A         ga       ----      a  ---a    -aca               gc       -c  g    -----------------------------------------------------------------------------------------------------------------------------------agcac     a      -  ggca      ---c    caa 
 cg caucagcACG GUG UGGCGGCGU UACCUGcgg  aggcggc    ggcggc ug    aggu    ggggcaagcagcugc  ggcgcag  cu cugg                                                                                                                                        cucca gacguu gc    cuuguu    ugcu   u
 || |||||||||| ||| ||||||||| |||||||||  |||||||    |||||| ||    ||||    |||||||||||||||  |||||||  || ||||                                                                                                                                        ||||| |||||| ||    ||||||    ||||   a
 gu GUAGUUGUGC CAC GCUGCCGCA guggacguc  uccgcug    cugccg ac    uccg    ccccguucgucgacg  ucgcguc  ga ggcc                                                                                                                                        ggggu uugcga cg    gaguaa    acga   c
a  c          C   C         c         --       uagg      c  cacc    ccua               --       ac  g    ccgcgcucuucuugaagcuacggucucggacguccgguugacccacagacacaccgguauagguacgucagggugaugaagacggccgcguguucgucgagguaguaauggagcaguacaaccggcggaccgggua     -      u  auag      uaaa    aca 

Annotation confidence Medium

Genome context

12: 13821490-13821896 [-]

Mature osa-miR5805-5p

• Accession: MIMAT0023276
• Description: Oryza sativa osa-miR5805-5p mature miRNA
• Sequence: 11 - ACGAGUGAUGGCGGCGUAUACCUG - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR5805-3p

• Accession: MIMAT0056279
• Description: Oryza sativa osa-miR5805-3p mature miRNA
• Sequence: 380 - ACGCCGUCGCCACCCGUGUUGAUG - 403
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207