Stem-loop osa-MIR5830

Accession

MI0019849

Description

Oryza sativa osa-MIR5830 precursor miRNA

Sequence

526 reads, 3.0 reads per million, 85 experiments

aaaAUCACACAUGUAGAUGAGgugauguuacacacuuuguuuaucauauauaaaaauaacauuuuuuuuggacaaaucaucaagacauuuuucuuguucaaacuuuauuauuuuuauaucucacaaacgaagacaaguuuagacaagauuuuauauaugguuguGUAGCAUCGUAUUAUCUACAUGUGugguuuu
((((((((((((((((((((..((((((((((((........(((((((((((((..........((((((........))))))......(((((((.((((((.............................)))))).))))))))))))))))))))))))))))))))..))))))))))))))))))))

Structure

                    Gg            cuuuguuu             auaacauuuuuuuuggacaaaucaucaagacauuuu       c      uauuauuuuuaua 
aaaAUCACACAUGUAGAUGA  ugauguuacaca        aucauauauaaaa                                    ucuuguu aaacuu             u
||||||||||||||||||||  ||||||||||||        |||||||||||||                                    ||||||| ||||||             c
uuuugguGUGUACAUCUAUU  GCUACGAUGugu        ugguauauauuuu                                    agaacag uuugaa             u
                    AU            --------             ------------------------------------       a      cagaagcaaacac 

Annotation confidence Not enough data

Genome context

1: 4352437-4352631 [-]

Mature osa-miR5830-5p

• Accession: MIMAT0023304
• Description: Oryza sativa osa-miR5830-5p mature miRNA
• Sequence: 4 - AUCACACAUGUAGAUGAG - 21
• Evidence: experimental ; Illumina [1]

Mature osa-miR5830-3p

• Accession: MIMAT0056303
• Description: Oryza sativa osa-miR5830-3p mature miRNA
• Sequence: 165 - GUAGCAUCGUAUUAUCUACAUGUG - 188
• Evidence: experimental ; unknown

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207