Stem-loop osa-MIR5813

Accession

MI0019830

Description

Oryza sativa osa-MIR5813 precursor miRNA

Sequence

7266 reads, 35.0 reads per million, 141 experiments

uggugagcuaauuuucAUGACCAGGUCACUGCUUGCcuuugcaguaccauuauggguuaccgugccagauugagggaaggaaugaaaaggguaaagcaaaggcAAGCAGCGACUCUGGUCAUGGAauuggagcca
((((...(((((((.((((((((((((.((((((((((((((..((((.......(((.((.(.((.......)).).)))))......))))..)))))))))))))).))).)))))))))))))))).))))

Structure

    gag       u         -   A              ag    auuaugg   a  g g  ag 
uggu   cuaauuu cAUGACCAG GUC CUGCUUGCcuuugc  uacc       guu cc u cc  a
||||   ||||||| ||||||||| ||| ||||||||||||||  ||||       ||| || | ||  u
accg   gguuaAG GUACUGGUC CAG GACGAAcggaaacg  augg       uaa gg a gg  u
    --a       -         U   C              aa    -gaaaag   -  a g  ag 

Annotation confidence Medium

Genome context

4: 9952990-9953124 [-]

Mature osa-miR5813-5p

• Accession: MIMAT0056287
• Description: Oryza sativa osa-miR5813-5p mature miRNA
• Sequence: 17 - AUGACCAGGUCACUGCUUGC - 36
• Evidence: experimental ; unknown

Mature osa-miR5813-3p

• Accession: MIMAT0023285
• Description: Oryza sativa osa-miR5813-3p mature miRNA
• Sequence: 104 - AAGCAGCGACUCUGGUCAUGGA - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207