Stem-loop osa-MIR5810

Accession

MI0019827

Description

Oryza sativa osa-MIR5810 precursor miRNA

Literature search

1 open access papers mention osa-MIR5810
(1 sentences)

Sequence

4376 reads, 15.0 reads per million, 129 experiments

gugcuucauaaaugcuuuucuccacuuaggguuccguuagcaacccuccAUUAAGUACUAUAGGAUGAACAgugcauuuaucggugugggauggACGGAACCCUAAUGGCGAUGGCAUuuaugggaca
.((.((((((((((((..((.(((.(((((((((((((..((.(((.((..((((((((...........)))))..)))..))...))).)))))))))))))))))).)).)))))))))))).))

Structure

g  c            uu  u   c             ag  a   --u  AU   --     AUAG 
 ug uucauaaaugcu  uc cca uuaggguuccguu  ca ccc   cc  UAA  GUACU    G
 || ||||||||||||  || ||| |||||||||||||  || |||   ||  |||  |||||    A
 ac ggguauuUACGG  AG GGU AAUCCCAAGGCAg  gu ggg   gg  auu  cgugA    U
-  a            -U  C   -             --  a   ugu  cu   ua     CAAG 

Annotation confidence Low

Genome context

12: 7333292-7333419 [-]

Mature osa-miR5810-5p

• Accession: MIMAT0056285
• Description: Oryza sativa osa-miR5810-5p mature miRNA
• Sequence: 50 - AUUAAGUACUAUAGGAUGAACA - 71
• Evidence: experimental ; unknown

Mature osa-miR5810-3p

• Accession: MIMAT0023282
• Description: Oryza sativa osa-miR5810-3p mature miRNA
• Sequence: 95 - ACGGAACCCUAAUGGCGAUGGCAU - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207