Stem-loop osa-MIR812u

Accession

MI0019818

Description

Oryza sativa osa-MIR812u precursor miRNA

Literature search

9 open access papers mention osa-MIR812u
(15 sentences)

Sequence

60101 reads, 187.0 reads per million, 142 experiments

uguuuuauuuuaaguguaaccauaaaauuucAUGCCCAAUUUUGAUCGUucaucuuauuuggauuuuuuuauaauuaauauuuuuauuauuaugagauaauaagacaugaauaguuacuuuauuuguaacuuacguuuuuaauuuuuuuaaguuuuuuaaaagacggacggucaaaguugaucACGGAAAAUCAUGGCUGCACUUAAaaaugggaca
((((((((((((((((((.((((....((((.((..(((((((((((((((((((.....))))..(((((((((.((((....)))))))))))))...(((((.(((...((((((.......))))))..))))))))..((((((((.....)))))))).)))))))))))))))..)).))))....)))).))))))).)))))))))))

Structure

           -       a    aaaa    A  CC               aucuuauuuggauuuuuuuauaauuaauauuuuuauuauuaugagauaa     c   aau      uu 
uguuuuauuuu aagugua ccau    uuuc UG  CAAUUUUGAUCGUuc                                                 uaaga aug   aguuac  u
||||||||||| ||||||| ||||    |||| ||  |||||||||||||||                                                 ||||| |||   ||||||  a
acaggguaaaA UUCACGU GGUA    AAGG Ac  guugaaacuggcagg                                                 auuuu ugc   ucaaug  u
           A       C    CUAA    C  ua               -------------------------cagaaaauuuuuugaauuuuuuua     -   -au      uu 

Annotation confidence Low

Genome context

11: 8663581-8663797 [-]

Mature osa-miR812u-5p

• Accession: MIMAT0056276
• Description: Oryza sativa osa-miR812u-5p mature miRNA
• Sequence: 32 - AUGCCCAAUUUUGAUCGU - 49
• Evidence: experimental ; unknown

Mature osa-miR812u-3p

• Accession: MIMAT0023273
• Description: Oryza sativa osa-miR812u-3p mature miRNA
• Sequence: 184 - ACGGAAAAUCAUGGCUGCACUUAA - 207
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207