Stem-loop osa-MIR812t

Accession

MI0019817

Description

Oryza sativa osa-MIR812t precursor miRNA

Literature search

9 open access papers mention osa-MIR812t
(15 sentences)

Sequence

123354 reads, 461.0 reads per million, 142 experiments

uauguuccauuuuaagugaaaccaugaguuuuUUACCGAACUUUGAUUGUCUgucuuauuugaaauuuuuuuauaauuaguauuuuuacuguuaugagaugauaaagcaugaauaauacuuuaugcaugacuuaugcuuuuaauuuuuucaaauuuuuuucaaauaagacgaacgaucaaaguuuagcACGGAAAAUCAUGGCUGCACUUAAaauagaacau
.((((((.((((((((((...((((((.((((((.(.(((((((((((((.((((((((((((((((.(((((((((.((((....))))))))))))).)))(((((((((...((.(.....).))...)))))))))..................))))))))))))).))))))))))))).)...))))))))))))...)))))))))).))))))

Structure

u      c          aaa      g      --A C             C             -------------------------------------------------------   u         u    u 
 auguuc auuuuaagug   ccauga uuuuUU   C GAACUUUGAUUGU Ugucuuauuugaa                                                       auu uuuuauaau agua u
 |||||| ||||||||||   |||||| ||||||   | ||||||||||||| |||||||||||||                                                       ||| ||||||||| ||||  
 uacaag uaaAAUUCAC   GGUACU AAAAGG   g uuugaaacuagca gcagaauaaacuu                                                       uag agaguauug ucau u
-      a          GUC      -      CAc a             a             uuuuuaaacuuuuuuaauuuucguauucaguacguauuucauaauaaguacgaaa   u         -    u 

Annotation confidence Low

Genome context

6: 17370227-17370448 [-]

Mature osa-miR812t-5p

• Accession: MIMAT0056275
• Description: Oryza sativa osa-miR812t-5p mature miRNA
• Sequence: 33 - UUACCGAACUUUGAUUGUCU - 52
• Evidence: experimental ; unknown

Mature osa-miR812t-3p

• Accession: MIMAT0023272
• Description: Oryza sativa osa-miR812t-3p mature miRNA
• Sequence: 189 - ACGGAAAAUCAUGGCUGCACUUAA - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207