miRBase entry: 15937218

The developmental miRNA profiles of zebrafish as determined by small RNA cloning

PubMed ID 15937218
Authors "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
Journal "Genes Dev
Volume 19
Pages 1288-1293

There are 275 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
dre-mir-10a MI0001363 888 chr12 27134869 27134967 + -
dre-mir-10b-1 MI0001364 23943 chr9 1952956 1953033 - High
dre-mir-34a MI0001365 145 chr23 22591058 22591155 + -
dre-mir-181b-1 MI0001366 4611 chr2 45202223 45202331 - -
dre-mir-181b-2 MI0001367 4629 chr8 53023679 53023764 + High
dre-mir-182 MI0001368 2150 chr4 15075665 15075732 + -
dre-mir-183 MI0001369 683 chr4 15074566 15074663 + High
dre-mir-187 MI0001370 24 chr19 34135607 34135695 + -
dre-mir-192 MI0001371 162 chr10 27063354 27063438 + High
dre-mir-196a-1 MI0001372 441 chr23 36088091 36088196 + High
dre-mir-199-1 MI0001373 5531 chr20 14875460 14875546 + High
dre-mir-199-2 MI0001374 5528 chr5 1376773 1376868 - -
dre-mir-199-3 MI0001375 2482 chr3 47195137 47195234 - High
dre-mir-203a MI0001376 5116 chr17 45808153 45808248 + High
dre-mir-204-1 MI0001377 5284 chr5 25972068 25972160 + High
dre-mir-205 MI0001378 18442 chr23 33290273 33290361 + High
dre-mir-210 MI0001379 142 chr25 25506483 25506555 - High
dre-mir-214 MI0001381 368 chr20 14877639 14877738 + High
dre-mir-216a MI0001382 14 chr22 28779949 28780037 - -
dre-mir-217 MI0001383 306 chr22 28779715 28779812 - -
dre-mir-219-1 MI0001384 45 chr10 10329464 10329554 - High
dre-mir-219-2 MI0001385 96 chr5 65101371 65101450 + -
dre-mir-221 MI0001387 1739 chr9 33920932 33921024 - High
dre-mir-222a MI0001388 5132 chr9 33921464 33921571 - High
dre-mir-430a-1 MI0001527 77906 chr10 4493277 4493358 + -
dre-mir-430b-1 MI0001528 244455 chr4 28695960 28696040 + High
dre-mir-430c-1 MI0001529 117821 chr4 28693371 28693443 + High
dre-mir-451 MI0001732 1319 chr5 42271971 42272030 - -
dre-let-7a-1 MI0001857 13812 chr11 27503232 27503320 - High
dre-let-7a-2 MI0001858 13783 chr15 21437876 21437959 + -
dre-let-7a-3 MI0001860 13908 chr4 18654155 18654261 - High
dre-let-7a-4 MI0001861 13778 chr5 29990452 29990544 + -
dre-let-7a-5 MI0001862 13947 chr23 5431196 5431319 - High
dre-let-7a-6 MI0001863 13902 chr6 54506458 54506586 - High
dre-let-7b MI0001865 1886 chr4 18653148 18653241 - High
dre-let-7c-1 MI0001866 912 chr15 29795823 29795929 + High
dre-let-7c-2 MI0001867 903 chr10 38072077 38072168 - High
dre-let-7d-1 MI0001868 484 chr16 24881122 24881218 + High
dre-let-7d-2 MI0001870 485 chr19 9429857 9429944 + High
dre-let-7e MI0001871 2136 chr23 5431418 5431517 - -
dre-let-7f MI0001872 1337 chr11 27503017 27503132 - -
dre-let-7g-1 MI0001873 726 chr23 18382456 18382551 - -
dre-let-7g-2 MI0001874 725 chr23 28536361 28536457 + -
dre-let-7h MI0001875 446 chr23 28536665 28536778 + -
dre-let-7i MI0001876 227 chr25 1629655 1629749 - -
dre-mir-1-2 MI0001877 3697 chr2 4116314 4116400 - -
dre-mir-1-1 MI0001878 3659 chr23 7210157 7210262 - -
dre-mir-7a-3 MI0001879 60 chr8 10205 10324 + -
dre-mir-9-1 MI0001880 2172 chr16 29216274 29216360 + High
dre-mir-9-2 MI0001881 2174 chr10 43535960 43536095 - High
dre-mir-9-4 MI0001882 1225 chr22 18254769 18254855 + High
dre-mir-9-3 MI0001883 2148 chr25 8551240 8551340 - High
dre-mir-9-5 MI0001884 2173 chr5 48170098 48170184 - High
dre-mir-9-6 MI0001885 2151 chr7 14379544 14379631 - High
dre-mir-9-7 MI0001886 1156 chr2 59102169 59102252 - High
dre-mir-10b-2 MI0001887 23818 chr23 36130001 36130092 + High
dre-mir-10c MI0001888 1641 chr3 23720651 23720745 + -
dre-mir-10d MI0001889 190 chr6 10867024 10867141 + High
dre-mir-15a-1 MI0001891 226 chr1 46722622 46722705 - High
dre-mir-15a-2 MI0001892 178 chr9 29652511 29652612 - -
dre-mir-15b MI0001893 811 chr7 26070874 26071007 + High
dre-mir-16a MI0001894 111 chr15 1543857 1543943 + High
dre-mir-16b MI0001895 740 chr1 46722379 46722518 - High
dre-mir-16c MI0001896 968 chr9 29652352 29652487 - High
dre-mir-17a-1 MI0001897 499 chr1 3298112 3298249 - High
dre-mir-17a-2 MI0001898 482 chr9 53436944 53437026 - High
dre-mir-20b MI0001899 922 chr14 31467167 31467260 - High
dre-mir-18a MI0001900 280 chr1 3298006 3298088 - High
dre-mir-18b MI0001901 158 chr9 53436831 53436917 - -
dre-mir-18c MI0001902 1983 chr14 31467376 31467460 - High
dre-mir-19a MI0001903 488 chr1 3297848 3297936 - High
dre-mir-19b MI0001904 1441 chr1 3297484 3297570 - High
dre-mir-19c MI0001905 728 chr14 31467026 31467130 - High
dre-mir-19d MI0001906 299 chr14 100660 100746 + High
dre-mir-20a MI0001907 2679 chr1 3297603 3297755 - High
dre-mir-21-1 MI0001908 155834 chr10 28198894 28199041 - High
dre-mir-21-2 MI0001909 153903 chr15 17373789 17373915 + -
dre-mir-22a MI0001910 15057 chr15 24908394 24908479 - High
dre-mir-22b MI0001912 247 chr5 12610802 12610883 + High
dre-mir-23a-1 MI0001913 2451 chr22 5293213 5293301 + -
dre-mir-23a-2 MI0001915 2783 chr3 13406226 13406323 + High
dre-mir-23a-3 MI0001916 2673 chr2 33900435 33900512 + High
dre-mir-23b MI0001917 858 chr10 15954579 15954659 + -
dre-mir-24-4 MI0001918 691 chr22 5307485 5307574 + -
dre-mir-24-2 MI0001919 681 chr3 13412979 13413060 + High
dre-mir-24-3 MI0001920 706 chr8 30162492 30162633 - High
dre-mir-24-1 MI0001921 677 chr10 15960835 15960914 + High
dre-mir-25 MI0001922 1153 chr14 100767 100848 + High
dre-mir-26a-1 MI0001923 8809 chr9 41733533 41733610 + High
dre-mir-26a-2 MI0001925 8299 chr2 21375467 21375594 + High
dre-mir-26a-3 MI0001926 8798 chr24 20470954 20471090 - -
dre-mir-26b MI0001927 3014 chr23 24675207 24675303 - High
dre-mir-27a MI0001928 1688 chr2 33902325 33902455 + High
dre-mir-27b MI0001929 6067 chr8 30167435 30167525 - High
dre-mir-27c MI0001930 2957 chr3 13406451 13406538 + High
dre-mir-27d MI0001931 285 chr10 15954727 15954815 + High
dre-mir-27e MI0001932 210 chr22 5299951 5300056 + High
dre-mir-29b-1 MI0001933 71 chr6 47467910 47467992 + High
dre-mir-29b-2 MI0001934 75 chr4 11608196 11608283 - High
dre-mir-29a MI0001938 500158 chr4 11606758 11606883 - High
dre-mir-30a MI0001940 63 chr19 4737576 4737664 + High
dre-mir-30b MI0001941 528 chr16 25341724 25341811 + High
dre-mir-30c MI0001944 1094 chr13 27804067 27804145 + High
dre-mir-30d MI0001946 3086 chr16 25341416 25341543 + High
dre-mir-30e-2 MI0001950 2501 chr13 27795130 27795209 + High
dre-mir-92a-1 MI0001951 7301 chr1 3297367 3297451 - High
dre-mir-92a-2 MI0001952 4845 chr9 53436280 53436374 - High
dre-mir-92b MI0001953 285 chr16 42898429 42898510 + High
dre-mir-93 MI0001954 1548 chr14 100502 100575 + High
dre-mir-96 MI0001955 38 chr4 15074715 15074839 + High
dre-mir-99-1 MI0001956 855 chr15 29795583 29795666 + High
dre-mir-99-2 MI0001957 795 chr10 38074312 38074391 - High
dre-mir-100-1 MI0001958 4195 chr15 21437633 21437728 + High
dre-mir-100-2 MI0001959 4248 chr5 29990147 29990221 + High
dre-mir-101a MI0001960 709 chr6 31365446 31365526 + High
dre-mir-101b MI0001961 51 chr5 1837149 1837260 - High
dre-mir-103 MI0001962 646 chr13 15223296 15223383 + -
dre-mir-107a MI0001963 334 chr12 16960693 16960781 + High
dre-mir-122 MI0001965 145 chr21 10881423 10881498 - -
dre-mir-124-1 MI0001966 281 chr2 26645317 26645398 - -
dre-mir-124-2 MI0001967 504 chr20 38905531 38905613 - High
dre-mir-124-3 MI0001968 504 chr24 24455632 24455748 + High
dre-mir-124-4 MI0001969 291 chr17 27402261 27402343 + High
dre-mir-124-5 MI0001970 504 chr23 17783413 17783541 + High
dre-mir-124-6 MI0001971 307 chr8 23122762 23122874 - High
dre-mir-125a-1 MI0001972 1071 chr16 24898171 24898253 + High
dre-mir-125a-2 MI0001973 1084 chr19 9443772 9443878 + High
dre-mir-125b-1 MI0001975 950 chr15 21447656 21447800 + High
dre-mir-125b-2 MI0001976 920 chr5 29998762 29998847 + High
dre-mir-125b-3 MI0001977 908 chr10 38051652 38051766 - High
dre-mir-125c MI0001978 228 chr15 29800968 29801052 + High
dre-mir-126a MI0001979 817 chr8 11548419 11548519 - High
dre-mir-128-1 MI0001980 268 chr22 12374786 12374883 + High
dre-mir-128-2 MI0001981 246 chr19 42915419 42915541 + -
dre-mir-129-2 MI0001982 28 chr7 50287933 50288019 - High
dre-mir-129-1 MI0001983 59 chr4 19047466 19047555 - High
dre-mir-130a MI0001984 111 chr10 33377130 33377214 - High
dre-mir-130b MI0001986 936 chr5 13299331 13299414 + High
dre-mir-130c-1 MI0001987 1226 chr10 17453363 17453503 + High
dre-mir-130c-2 MI0001988 1222 chr5 13288828 13288908 + High
dre-mir-132-1 MI0001989 12 chr15 25897715 25897799 + High
dre-mir-132-2 MI0001991 49 chr10 35645017 35645135 + High
dre-mir-133a-2 MI0001992 525 chr23 7172120 7172203 - -
dre-mir-133a-1 MI0001993 526 chr2 4114118 4114216 - -
dre-mir-133b MI0001994 377 chr20 19543379 19543462 - High
dre-mir-133c MI0001995 555 chr17 5962975 5963065 - High
dre-mir-135c-1 MI0001996 36 chr11 38175071 38175150 - -
dre-mir-135c-2 MI0001997 33 chr23 18063173 18063299 - -
dre-mir-137-1 MI0002000 219 chr2 20145741 20145825 - High
dre-mir-137-2 MI0002001 217 chr24 30352608 30352735 + High
dre-mir-138-1 MI0002002 275 chr18 17580159 17580245 + High
dre-mir-140 MI0002003 316 chr25 34791362 34791466 + High
dre-mir-141 MI0002004 1862 chr6 40656003 40656085 - High
dre-mir-142a MI0002005 759 chr5 3170736 3170826 + High
dre-mir-142b MI0002006 259 chr15 15383898 15383983 - High
dre-mir-143 MI0002007 2055 chr14 38742313 38742411 + -
dre-mir-143-2 MI0002008 None None None -
dre-mir-144 MI0002009 140 chr5 42272074 42272162 - High
dre-mir-145 MI0002010 583 chr14 38743941 38744053 + High
dre-mir-146a MI0002012 11796 chr13 11822170 11822283 + High
dre-mir-146b MI0002013 1370 chr21 41639979 41640058 + High
dre-mir-148 MI0002015 553 chr9 1644683 1644761 - High
dre-mir-150 MI0002016 61 chr3 32571309 32571387 + -
dre-mir-152 MI0002017 264 chr3 24095957 24096036 + High
dre-mir-153b MI0002019 690 chr6 13980945 13981092 + High
dre-mir-153a MI0002021 211 chr7 40485510 40485590 + High
dre-mir-153c MI0002022 254 chr9 7612376 7612526 + High
dre-mir-155 MI0002023 89 chr1 576444 576521 + -
dre-mir-181c MI0002024 349 chr3 34197694 34197771 + High
dre-mir-184-1 MI0002026 15693 chr18 26203303 26203389 - High
dre-mir-190a MI0002027 21 chr25 33139075 33139200 + -
dre-mir-462 MI0002028 33562 chr8 26082308 26082409 + -
dre-mir-193a-1 MI0002029 23 chr3 35959912 35960010 + High
dre-mir-193a-2 MI0002030 22 chr6 18517970 18518067 - High
dre-mir-193b MI0002032 292 chr3 43714699 43714783 + High
dre-mir-194a MI0002033 198 chr10 27063174 27063257 + -
dre-mir-194b MI0002034 40 chr14 45468955 45469031 - -
dre-mir-196a-2 MI0002035 409 chr19 19747619 19747694 + High
dre-mir-196b MI0002036 192 chr3 23673377 23673455 + High
dre-mir-200a MI0002037 2693 chr23 24072160 24072245 + High
dre-mir-200b MI0002038 2577 chr23 24072029 24072110 + High
dre-mir-200c MI0002039 1047 chr6 40656204 40656288 - High
dre-mir-202 MI0002040 32 chr13 50602639 50602714 + High
dre-mir-203b MI0002041 11673 chr20 27405878 27405962 + High
dre-mir-204-2 MI0002042 5666 chr7 29336996 29337119 - High
dre-mir-206-1 MI0002045 28760 chr20 19544648 19544746 - High
dre-mir-206-2 MI0002046 28086 chr17 5967238 5967346 - -
dre-mir-216b MI0002048 20 chr22 28780257 28780333 - -
dre-mir-218a-1 MI0002051 96 chr14 24562801 24562883 - -
dre-mir-218a-2 MI0002052 84 chr1 23866878 23866965 + -
dre-mir-218b MI0002053 8 chr10 17695265 17695340 + -
dre-mir-219-3 MI0002054 460 chr19 18861739 18861888 - High
dre-mir-301a MI0002059 236 chr10 33377001 33377086 - -
dre-mir-301b MI0002061 31 chr5 13289353 13289433 + High
dre-mir-301c MI0002062 173 chr10 17454490 17454572 + High
dre-mir-338-1 MI0002063 506 chr12 35710521 35710605 - High
dre-mir-338-2 MI0002064 513 chr12 17727528 17727651 + High
dre-mir-363 MI0002067 374 chr14 31466671 31466797 - High
dre-mir-365-1 MI0002068 97 chr3 43716827 43716915 + -
dre-mir-365-2 MI0002069 103 chr3 35960989 35961086 + High
dre-mir-365-3 MI0002070 102 chr6 18516311 18516409 - High
dre-mir-375-1 MI0002072 660 chr6 13800093 13800172 - High
dre-mir-375-2 MI0002073 633 chr9 11571973 11572055 - -
dre-mir-454a MI0002074 167 chr10 33376818 33376941 - -
dre-mir-454b MI0002076 919 chr5 13296307 13296422 + -
dre-mir-455-1 MI0002077 398 chr5 65250379 65250474 - High
dre-mir-430c-2 MI0002079 117821 chr4 28693975 28694047 + High
dre-mir-430c-3 MI0002080 117821 chr4 28695113 28695185 + High
dre-mir-430c-4 MI0002081 117821 chr4 28695717 28695789 + High
dre-mir-430c-5 MI0002082 117821 chr4 28696854 28696926 + High
dre-mir-430c-6 MI0002083 117821 chr4 28697458 28697530 + High
dre-mir-430c-7 MI0002087 117821 chr4 28699198 28699270 + High
dre-mir-430c-8 MI0002088 117821 chr4 28699824 28699896 + High
dre-mir-430c-9 MI0002089 117821 chr4 28700961 28701033 + High
dre-mir-430c-10 MI0002090 117821 chr4 28701587 28701659 + High
dre-mir-430c-11 MI0002091 117821 chr4 28702213 28702285 + High
dre-mir-430c-12 MI0002092 117821 chr4 28703350 28703422 + High
dre-mir-430c-13 MI0002093 117821 chr4 28705090 28705162 + High
dre-mir-430c-14 MI0002094 117821 chr4 28705716 28705788 + High
dre-mir-430c-15 MI0002095 117821 chr4 28706853 28706925 + High
dre-mir-430c-16 MI0002096 117821 chr4 28707457 28707529 + High
dre-mir-430c-17 MI0002097 117821 chr4 28708593 28708665 + High
dre-mir-430c-18 MI0002098 117821 chr4 28709197 28709269 + High
dre-mir-430a-2 MI0002111 78591 chr4 28694950 28695031 + High
dre-mir-430a-3 MI0002112 78591 chr4 28696691 28696772 + High
dre-mir-430a-4 MI0002113 78938 chr4 28693834 28693915 + High
dre-mir-430a-5 MI0002114 78591 chr4 28699035 28699116 + High
dre-mir-430a-6 MI0002115 78591 chr4 28700798 28700879 + High
dre-mir-430a-7 MI0002116 78591 chr4 28703187 28703268 + High
dre-mir-430a-8 MI0002117 78591 chr4 28704927 28705008 + High
dre-mir-430a-9 MI0002118 78591 chr4 28706690 28706771 + High
dre-mir-430a-10 MI0002119 78591 chr4 28708430 28708511 + High
dre-mir-430a-11 MI0002120 78893 chr4 28701424 28701505 + High
dre-mir-430a-12 MI0002121 78938 chr4 28695576 28695657 + High
dre-mir-430a-13 MI0002122 78938 chr4 28697317 28697398 + High
dre-mir-430a-14 MI0002123 78938 chr4 28707316 28707397 + High
dre-mir-430a-15 MI0002124 78938 chr4 28709056 28709137 + High
dre-mir-430a-16 MI0002125 78937 chr4 28697921 28698002 + High
dre-mir-430a-17 MI0002126 78937 chr4 28703813 28703894 + High
dre-mir-430a-18 MI0002131 77902 chr4 28693199 28693288 + -
dre-mir-430i-1 MI0002139 1055 chr4 28699661 28699742 + High
dre-mir-430i-2 MI0002140 1055 chr4 28702050 28702131 + High
dre-mir-430i-3 MI0002141 1055 chr4 28705553 28705634 + High
dre-mir-430b-2 MI0002142 244455 chr4 28700067 28700147 + High
dre-mir-430b-3 MI0002143 244455 chr4 28707700 28707780 + High
dre-mir-430b-4 MI0002144 244367 chr4 28693628 28693708 + High
dre-mir-430b-6 MI0002146 244465 chr4 28697111 28697191 + High
dre-mir-430b-7 MI0002147 244465 chr4 28701218 28701298 + High
dre-mir-430b-8 MI0002148 244465 chr4 28708850 28708930 + High
dre-mir-430b-9 MI0002149 244420 chr4 28698305 28698385 + High
dre-mir-430b-10 MI0002150 244455 chr4 28695370 28695450 + High
dre-mir-430b-11 MI0002151 244455 chr4 28697715 28697795 + High
dre-mir-430b-12 MI0002152 244455 chr4 28699455 28699535 + High
dre-mir-430b-13 MI0002153 244455 chr4 28701844 28701924 + High
dre-mir-430b-14 MI0002154 244455 chr4 28703607 28703687 + High
dre-mir-430b-15 MI0002155 244455 chr4 28705347 28705427 + High
dre-mir-430b-16 MI0002156 244455 chr4 28707110 28707190 + High
dre-mir-430b-17 MI0002157 244455 chr4 28709454 28709534 + High
dre-mir-430b-18 MI0002158 244441 chr4 28702456 28702536 + High
dre-mir-430b-5 MI0002166 244455 chr4 28694219 28694299 + High
dre-mir-430b-19 MI0002170 244441 chr4 28705959 28706039 + High
dre-mir-430b-20 MI0002171 244420 chr4 28704197 28704277 + High
dre-mir-456 MI0002176 71 chr17 22827063 22827147 + -
dre-mir-457a MI0002177 745 chr7 26071426 26071508 + High
dre-mir-457b MI0002178 144 chr14 31521930 31522007 - High
dre-mir-458 MI0002179 322 chr14 25159129 25159206 - High
dre-mir-459 MI0002180 5 chr1 1575483 1575563 + -
dre-mir-460 MI0002181 146 chr2 2301358 2301434 - High
dre-mir-461 MI0002183 11 chr16 15562681 15562759 + -
dre-mir-132-3 MI0019581 None None None -
dre-mir-137-3 MI0019582 None None None -
dre-mir-187-2 MI0019583 None None None -
dre-mir-27c-2 MI0019589 None None None -
dre-mir-23a-4 MI0019591 None None None -
dre-mir-24-5 MI0019592 None None None -



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