miRBase entry: dre-mir-456

Stem-loop dre-mir-456


Accession
MI0002176
Description
Danio rerio dre-mir-456 precursor miRNA mir-456
Gene
family?
RF00878; mir-456

Literature search
1 open access papers mention dre-mir-456
(5 sentences)

Sequence

1153 reads, 71 reads per million, 11 experiments
gcugguugugugugcaggcaucuuuccagucuacauguggauccaggagucugCAGGCUGGUUAGAUGGUUGUCAcguacccagc
(((((.((((((.((((.(((((..(((((((....((((((......)))))))))))))..))))).)))))))))).)))))

Structure
     u      u    g     uu       acau      cc 
gcugg ugugug gcag caucu  ccagucu    guggau  a
||||| |||||| |||| |||||  |||||||    ||||||   
cgacc augcAC UGUU GUAGA  GGUCGGA    Cgucug  g
     c      -    G     UU       ----      ag 


Annotation confidence Not enough data
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Genome context
chr17: 22827063-22827147 [+]

Database links

Mature dre-miR-456

Accession MIMAT0001882
Description Danio rerio dre-miR-456 mature miRNA
Sequence 54 - CAGGCUGGUUAGAUGGUUGUCA - 75
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293