Stem-loop dre-let-7a-1

Accession

MI0001857

Description

Danio rerio dre-let-7a-1 precursor miRNA

Literature search

43 open access papers mention dre-let-7a-1
(336 sentences)

Sequence

195389 reads, 13763 reads per million, 11 experiments

gacggugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccacacugggagauaacuauacaaccuacugucuuucucaaaguc
(((..(((((.(((((((((((((((((((((.....(((...((((...)))).)))))))))))))))))))))))))))))..)))

Structure

   gg     U                     uuagg   aca    c 
gac  uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca  
|||  ||||| |||||||||||||||||||||     |||   |||| a
cug  acucu uucugucauccaacauaucaa     uag   gggu  
   aa     -                     -----   --a    c 

Annotation confidence Medium

Genome context

chr11: 27503232-27503320 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-let-7a-1

Mature dre-let-7a

• Accession: MIMAT0001759
• Description: Danio rerio dre-let-7a mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293