miRBase entry: dre-mir-124-6

Stem-loop dre-mir-124-6


Accession
MI0001971
Description
Danio rerio dre-mir-124-6 precursor miRNA

Literature search
23 open access papers mention dre-mir-124-6
(80 sentences)

Sequence

4522 reads, 307 reads per million, 8 experiments
ggguggugacacaggcccgccacucugCGUGUUCACGGCGGACCUUGAUuuaauauccauacaauUAAGGCACGCGGUGAAUGCCAAgagaggggucuuaaaacgacaaaccc
((((.((.....((((((....((((..((((((((.(((..((((((((............))))))))..))).))))))))..))))..)))))).......))..))))

Structure
    -g  --gacac      gcca    gC        G   GA        uaaua 
gggu  gu       aggccc    cucu  GUGUUCAC GCG  CCUUGAUu     u
||||  ||       ||||||    ||||  |||||||| |||  ||||||||      
ccca  ca       ucuggg    gagA  CGUAAGUG CGC  GGAAUuaa     c
    aa  gcaaaau      --ga    AC        G   AC        cauac 


Annotation confidence High
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Genome context
chr8: 23122762-23122874 [-]

Database links

Mature dre-miR-124-3p

Accession MIMAT0001819
Description Danio rerio dre-miR-124-3p mature miRNA
Sequence 66 - UAAGGCACGCGGUGAAUGCCAA - 87
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-124-6-5p

Accession MIMAT0031962
Description Danio rerio dre-miR-124-6-5p mature miRNA
Sequence 28 - CGUGUUCACGGCGGACCUUGAU - 49
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293