miRBase entry: dre-mir-29b-2

Stem-loop dre-mir-29b-2


Accession
MI0001934
Description
Danio rerio dre-mir-29b-2 precursor miRNA

Literature search
13 open access papers mention dre-mir-29b-2
(156 sentences)

Sequence

496 reads, 75 reads per million, 11 experiments
ucuuccuccagaugcugguuucacauggugguuuagauguguucuaccaaagucUAGCACCAUUUGAAAUCAGUGUucuuggggaggg
.(((((((.((((((((((((((.((((((..((((((.((......))..)))))))))))).))))))))))).))).))))))).

Structure
u       c   -           c      gu      -g  uu 
 cuuccuc aga ugcugguuuca auggug  uuagau  ug  c
 ||||||| ||| ||||||||||| ||||||  ||||||  ||   
 ggagggg ucu GUGACUAAAGU UACCAC  GAUcug  ac  u
g       u   U           U      --      aa  ca 


Annotation confidence High
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Genome context
chr4: 11608196-11608283 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-29b

Accession MIMAT0001801
Description Danio rerio dre-miR-29b mature miRNA
Sequence 55 - UAGCACCAUUUGAAAUCAGUGU - 76
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293