Stem-loop dre-mir-17a-1

Accession

MI0001897

Description

Danio rerio dre-mir-17a-1 precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

20 open access papers mention dre-mir-17a-1
(170 sentences)

Sequence

7237 reads, 448 reads per million, 11 experiments

ggacuuucuugaguggacuugguuggugucaauguauuguCAAAGUGCUUACAGUGCAGGUAguauuauggaauaucuACUGCAGUGGAGGCACUUCUAGcaauacacuugaccauuuuaaccuuccuccaggcaucc
(((....((((.(.(((...((((((.(((((((((((((..(((((((..((.(((((.(((((((....)))).)))))))).))..)))))))...)))))))).)))))....)))))).))).)))))..)))

Structure

   cuuu    a u   cuu      ---u     -        -CA       UA  G     G   -    a 
gga    cuug g gga   gguugg    gucaa uguauugu   AAGUGCU  CA UGCAG UAg uauu u
|||    |||| | |||   ||||||    ||||| ||||||||   |||||||  || ||||| ||| ||||  
ccu    ggac c ccu   ccaauu    caguu acauaacG   UUCACGG  GU ACGUC Auc auaa g
   --ac    - u   --u      uuac     c        AUC       AG  G     -   u    g 

Annotation confidence Medium

Genome context

chr1: 3298112-3298249 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from dre-mir-17a-1

Mature dre-miR-17a-5p

• Accession: MIMAT0001777
• Description: Danio rerio dre-miR-17a-5p mature miRNA
• Sequence: 41 - CAAAGUGCUUACAGUGCAGGUA - 62
• Evidence: experimental ; cloned [1]

Mature dre-miR-17a-3p

• Accession: MIMAT0003396
• Description: Danio rerio dre-miR-17a-3p mature miRNA
• Sequence: 79 - ACUGCAGUGGAGGCACUUCUAG - 100
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293