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mir-17 family (RF00051)

Summary
This family represents the microRNA (miRNA) precursor mir-17, family, which includes mir-20, mir-91, and mir-103. miRNAs are transcribed as ~70nt precursors (modelled here) and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA. This family represents the microRNA (miRNA) precursor mir-17 imported from miRBase. The structure of mir-17 has been reported in PDB 9OBM [4].

There are 234 hairpins in the mir-17 family

Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-18a MI0000072 8032 chr13 91350751 91350821 + High
hsa-mir-20a MI0000076 6826 chr13 91351065 91351135 + High
hsa-mir-93 MI0000095 1906 chr7 100093768 100093847 - High
hsa-mir-106a MI0000113 2817 chrX 134170198 134170278 - High
mmu-mir-106a MI0000406 118 X 51831380 51831444 - High
mmu-mir-106b MI0000407 2806 5 138163999 138164080 - High
mmu-mir-18a MI0000567 1228 14 115281283 115281378 + High
mmu-mir-20a MI0000568 1950 14 115281589 115281695 + High
mmu-mir-93 MI0000581 2058 5 138163785 138163872 - High
rno-mir-20a MI0000638 85 chr15 100180334 100180418 + High
mmu-mir-17 MI0000687 2249 14 115281103 115281186 + High
hsa-mir-106b MI0000734 2518 chr7 100093993 100094074 - High
rno-mir-17-1 MI0000845 120 chr15 100179879 100179962 + High
rno-mir-18a MI0000846 40 chr15 100180015 100180110 + High
rno-mir-93 MI0000880 438 chr12 19307543 19307629 - High
rno-mir-106b MI0000889 112 chr12 19307752 19307833 - High
gga-mir-20a MI0001181 1777 1 148016592 148016689 - High
gga-mir-18a MI0001183 127 1 148016912 148017004 - High
gga-mir-17 MI0001184 961 1 148017067 148017151 - High
gga-mir-18b MI0001209 27 4 3924333 3924416 - High
gga-mir-106 MI0001210 190 4 3924464 3924544 - High
xla-mir-20 MI0001453 - chr8L 48822066 48822139 - High
gga-mir-20b MI0001517 396 4 3924152 3924236 - High
hsa-mir-18b MI0001518 1926 chrX 134170041 134170111 - High
hsa-mir-20b MI0001519 152 chrX 134169809 134169877 - High
dre-mir-17a-1 MI0001897 499 chr1 3298112 3298249 - High
dre-mir-17a-2 MI0001898 482 chr9 53436944 53437026 - High
dre-mir-20b-1 MI0001899 922 chr14 31467167 31467260 - High
dre-mir-18a MI0001900 280 chr1 3298006 3298088 - High
dre-mir-18b MI0001901 158 chr9 53436831 53436917 - High
dre-mir-18c MI0001902 1983 chr14 31467376 31467460 - High
dre-mir-20a MI0001907 2679 chr1 3297603 3297755 - High
dre-mir-93 MI0001954 1548 chr14 100502 100575 + High
ssc-mir-106a MI0002412 20 chrX 126200183 126200263 - High
ssc-mir-20a MI0002423 736 chr11 66610513 66610583 + High
ssc-mir-18a MI0002455 46 chr11 66610195 66610286 + High
ggo-mir-17 MI0002965 - chr13 74168191 74168274 + High
ggo-mir-18a MI0002966 - chr13 74168337 74168407 + -
ggo-mir-20a MI0002968 - chr13 74168651 74168721 + -
lca-mir-17 MI0002971 - None None -
lca-mir-18 MI0002972 - None None -
lca-mir-20 MI0002974 - None None -
age-mir-17 MI0002977 - None None -
age-mir-18 MI0002978 - None None -
age-mir-20 MI0002980 - None None -
ppa-mir-17 MI0002983 - chr13 91707328 91707411 + -
ppa-mir-18 MI0002984 - chr13 91707474 91707544 + -
ppa-mir-20 MI0002986 - chr13 91707788 91707858 + -
ppy-mir-17 MI0002989 - chr13 93460030 93460113 + -
ppy-mir-18a MI0002990 - chr13 93460176 93460246 + -
ppy-mir-20a MI0002992 - chr13 93460490 93460560 + -
ptr-mir-17 MI0002995 - chr13 77006711 77006794 + High
ptr-mir-18a MI0002996 - chr13 77006857 77006927 + -
ptr-mir-20a MI0002998 - chr13 77007171 77007241 + High
mml-mir-17 MI0003001 339 17 73152113 73152196 + High
mml-mir-18a MI0003002 31 17 73152259 73152329 + High
mml-mir-20a MI0003004 502 17 73152573 73152643 + High
sla-mir-17 MI0003007 - None None -
sla-mir-18 MI0003008 - None None -
sla-mir-20 MI0003010 - None None -
lla-mir-17 MI0003013 - None None -
lla-mir-18 MI0003014 - None None -
lla-mir-20 MI0003016 - None None -
mne-mir-17 MI0003019 - None None -
mne-mir-18 MI0003020 - None None -
mne-mir-20 MI0003022 - None None -
ggo-mir-106b MI0003059 - chr7 77984054 77984135 + High
ggo-mir-93 MI0003060 - chr7 77984281 77984360 + -
age-mir-106b MI0003062 - None None -
age-mir-93 MI0003063 - None None -
ppa-mir-106b MI0003064 - chr7 105562802 105562883 - -
ppa-mir-93 MI0003065 - chr7 105562577 105562656 - -
ppy-mir-106b MI0003067 - chr7 9079286 9079367 - -
ppy-mir-93 MI0003068 - chr7 9079061 9079140 - -
ptr-mir-106b MI0003070 - chr7 103151247 103151328 - High
ptr-mir-93 MI0003071 - chr7 103151022 103151101 - High
mml-mir-106b MI0003073 421 3 42276401 42276482 - High
mml-mir-93 MI0003074 1590 3 42276178 42276257 - High
sla-mir-106b MI0003076 - None None -
sla-mir-93 MI0003077 - None None -
lla-mir-106b MI0003078 - None None -
lla-mir-93 MI0003079 - None None -
mne-mir-106b MI0003081 - None None -
mne-mir-93 MI0003082 - None None -
ggo-mir-106a MI0003096 - chrX 134208148 134208228 - -
age-mir-106a MI0003099 - None None -
ppa-mir-106a MI0003102 - chrX 133616492 133616572 - -
mml-mir-106a MI0003107 20 X 130425887 130425967 - High
ppy-mir-106a MI0003109 - chrX 133613123 133613203 - -
ptr-mir-106a MI0003112 - chrX 134038418 134038498 - -
sla-mir-106a MI0003115 - None None -
mne-mir-106a MI0003120 - None None -
fru-mir-17-1 MI0003231 - ref|NC_042297.1| 16855345 16855430 + High
tni-mir-17-1 MI0003232 - 5 8188854 8188939 - Medium
fru-mir-18 MI0003233 - ref|NC_042297.1| 16855479 16855554 + High
tni-mir-18 MI0003234 - 5 8188729 8188804 - Medium
fru-mir-17-2 MI0003441 - ref|NC_042285.1| 18583733 18583814 + High
tni-mir-17-2 MI0003442 - 2 12891968 12892049 + Medium
fru-mir-20 MI0003443 - ref|NC_042285.1| 18584260 18584339 + Medium
tni-mir-20a MI0003444 - 2 12892487 12892559 + High
mmu-mir-20b MI0003536 135 X 51830990 51831069 - High
rno-mir-20b MI0003554 38 chrX 140117518 140117589 - High
bta-mir-18b MI0004732 34 X 17976170 17976244 - High
bta-mir-18a MI0004740 61 12 65689560 65689630 + High
bta-mir-20a MI0004741 99 12 65689868 65689938 + High
xtr-mir-17 MI0004803 - 2 123388483 123388569 - High
xtr-mir-106 MI0004822 - 8 68370627 68370689 - -
xtr-mir-18a MI0004893 - 2 123388355 123388441 - High
xtr-mir-93a MI0004900 - 3 144223304 144223376 + -
xtr-mir-93b MI0004901 - 3 144223309 144223373 + -
xtr-mir-20a MI0004911 - 2 123388085 123388168 - High
xtr-mir-18b MI0004959 - 8 68370500 68370577 - High
xtr-mir-20b MI0004961 - 8 68370342 68370415 - -
bta-mir-106a MI0005005 46 X 17976329 17976409 - High
bta-mir-20b MI0005015 28 X 17975935 17976003 - High
bta-mir-17 MI0005031 256 12 65689417 65689500 + High
bta-mir-93 MI0005050 618 25 36355766 36355842 + High
mdo-mir-17 MI0005354 181 ref|NC_077233.2| 105836523 105836607 - High
mdo-mir-18a MI0005355 60 ref|NC_077233.2| 105836389 105836460 - High
mdo-mir-20a MI0005357 297 ref|NC_077233.2| 105836059 105836160 - High
mdo-mir-93 MI0005369 167 ref|NC_077228.1| 261536029 261536117 + High
mmu-mir-18b MI0005483 141 X 51831208 51831290 - High
rno-mir-17-2 MI0006131 89 chrX 140117891 140117968 - High
oan-mir-106 MI0006693 132 6 24650357 24650470 - Medium
oan-mir-18-1 MI0006694 24 6 24650182 24650311 - High
oan-mir-20b MI0006695 311 6 24649990 24650095 - High
oan-mir-20a-1 MI0006872 20 10 29148030 29148165 - -
oan-mir-20a-2 MI0006874 721 10 22689515 22689623 - High
oan-mir-17 MI0006960 519 10 22690057 22690141 - High
mml-mir-18b MI0007590 3 X 130425730 130425800 - High
mml-mir-20b MI0007591 29 X 130425498 130425566 - High
cfa-mir-17 MI0008050 - 22 42879262 42879320 + High
cfa-mir-20a MI0008052 - 22 42879711 42879769 + High
cfa-mir-106b MI0008109 - 6 9435559 9435617 + High
cfa-mir-93 MI0008110 - 6 9435781 9435841 + High
cfa-mir-106a MI0008173 - X 106756274 106756330 - High
ssc-mir-17 MI0008214 201 chr11 66610060 66610136 + High
ptr-mir-20b MI0008579 - chrX 134038030 134038097 - High
bta-mir-106b MI0009724 247 25 36355563 36355642 + High
cfa-mir-20b MI0010322 - X 106755847 106755914 - High
cfa-mir-18b MI0010323 - X 106756095 106756171 - High
cfa-mir-18a MI0010324 - 22 42879387 42879478 + High
mdo-mir-106 MI0012498 15 ref|NC_077235.2| 40127094 40127162 - -
eca-mir-106b MI0012797 31 13 8115359 8115417 - High
eca-mir-93 MI0012804 334 13 8115133 8115191 - High
eca-mir-17 MI0012831 150 17 61685042 61685100 + High
eca-mir-18a MI0012832 9 17 61685182 61685242 + High
eca-mir-20a MI0012835 63 17 61685489 61685559 + High
eca-mir-106a MI0012942 96 X 110759183 110759263 - High
eca-mir-18b MI0012947 3 X 110759033 110759091 - High
eca-mir-20b MI0012950 63 X 110758793 110758861 - High
tgu-mir-20a MI0013770 - chr1 43202624 43202696 - -
tgu-mir-17a MI0013784 - chr1 43203076 43203147 - -
tgu-mir-18a MI0013815 - chr1 43202937 43203008 - -
tgu-mir-106 MI0013818 - chr4A 7273746 7273818 + -
tgu-mir-20b MI0013819 - chr4A 7274092 7274164 + -
ppy-mir-18b MI0014796 - chrX 133612966 133613036 - -
ppy-mir-20b MI0014797 - chrX 133612734 133612802 - -
pma-mir-17a MI0017014 - ref|NC_046115.1| 748750 748831 + -
pma-mir-18a MI0017017 - ref|NC_046132.1| 1977181 1977277 + -
pma-mir-18b MI0017018 - ref|NC_046115.1| 749042 749132 + -
pma-mir-20a MI0017022 - ref|NC_046115.1| 751982 752072 + -
pma-mir-20b MI0017023 - ref|NC_046132.1| 1982797 1982890 + -
ssc-mir-18b MI0017985 0 chrX 126200019 126200101 - Medium
aca-mir-17 MI0018772 - GL343584.1 108264 108330 + High
aca-mir-18a MI0018783 - GL343584.1 108387 108482 + High
aca-mir-18b MI0018784 - GL344214.1 22462 22553 + Medium
aca-mir-20a MI0018812 - GL343584.1 108689 108770 + High
aca-mir-20b MI0018813 - GL344214.1 24032 24114 + Medium
ola-mir-18-1 MI0019417 - 3 15107452 15107557 + High
ola-mir-20a-1 MI0019418 - 3 15107783 15107891 + Medium
ola-mir-106a MI0019473 - 10 2001187 2001293 + Medium
ola-mir-20a-2 MI0019539 - 21 25693363 25693464 - Medium
ola-mir-18-2 MI0019541 - 21 25693655 25693746 - High
ola-mir-17 MI0019542 - 21 25694055 25694151 - High
sha-mir-93 MI0019647 - GL856864.1 887817 887966 + -
cgr-mir-106b MI0020379 1394 JH001296.1 179099 179179 - High
cgr-mir-17 MI0020419 3908 JH001979.1 109700 109777 - High
cgr-mir-18a MI0020433 385 JH001979.1 109537 109639 - High
cgr-mir-20a MI0020457 3765 JH001979.1 109227 109306 - High
cgr-mir-93 MI0020562 7651 JH001296.1 178880 178960 - High
ggo-mir-20b MI0020774 - chrX 134207730 134207842 - -
ggo-mir-18b MI0020857 - chrX 134207967 134208075 - -
ssc-mir-20b-1 MI0022124 25 chrX 126199775 126199854 - High
ssc-mir-20b-2 MI0022125 25 None None High
ccr-mir-17 MI0023342 - None None High
ccr-mir-18a MI0023350 - None None High
ccr-mir-18b MI0023351 - None None High
ccr-mir-18c MI0023352 - None None Medium
ccr-mir-20a MI0023367 - None None High
ccr-mir-93 MI0023421 - None None High
mdo-mir-20b MI0023938 52 ref|NC_077235.2| 40126594 40126654 - Medium
mdo-mir-18b MI0023939 56 ref|NC_077235.2| 40126903 40126967 - High
ipu-mir-17a MI0024524 - None None -
ipu-mir-17b MI0024525 - None None -
ipu-mir-18a MI0024538 - None None -
ipu-mir-20a MI0024566 - None None -
oar-mir-106b MI0025249 6806 chr24 36244122 36244201 + High
oar-mir-17 MI0025258 10276 chr10 66141653 66141736 + High
oar-mir-106a MI0025282 996 chrX 95476711 95476791 + High
ssa-mir-106a-1 MI0026438 - None None High
ssa-mir-106a-2 MI0026439 - None None High
ssa-mir-106b MI0026440 - None None High
ssa-mir-17-3 MI0026533 - None None High
ssa-mir-17-2 MI0026534 - None None High
ssa-mir-17-1 MI0026535 - None None High
ssa-mir-18a MI0026547 - None None High
ssa-mir-18b MI0026548 - None None Medium
ssa-mir-20a-1 MI0026601 - None None High
ssa-mir-20a-2 MI0026602 - None None Medium
ssa-mir-20a-3 MI0026603 - None None High
ssa-mir-20b MI0026604 - None None Medium
ssa-mir-93a-1 MI0026763 - None None High
ssa-mir-93a-2 MI0026764 - None None High
efu-mir-17 MI0028684 - JH977750.1 95455 95538 + Medium
efu-mir-106 MI0028872 - JH977625.1 7045231 7045313 - High
efu-mir-93 MI0028873 - JH977625.1 7045012 7045095 - High
chi-mir-106a MI0030593 - chrX 40075491 40075571 - High
chi-mir-106b MI0030594 - chr25 38750004 38750083 + High
chi-mir-17 MI0030648 - chr12 66729474 66729557 + High
chi-mir-18a MI0030660 - chr12 66729611 66729699 + High
chi-mir-18b MI0030661 - chrX 40075324 40075417 - High
chi-mir-20a MI0030686 - chr12 66729906 66730012 + High
chi-mir-20b MI0030687 - chrX 40075091 40075165 - Medium
chi-mir-93 MI0030841 - None None Medium
tch-mir-17 MI0031174 - KB320410.1 3473178 3473237 + High
tch-mir-20a MI0031232 - KB320410.1 3473624 3473682 + High
tch-mir-93 MI0031290 - KB320709.1 105392 105453 + High
oha-mir-17 MI0031372 - AZIM01002132.1 158388 158479 - -
oha-mir-18a MI0031381 - AZIM01002132.1 158255 158334 - -
oha-mir-18b MI0031382 - AZIM01002644.1 177020 177099 + -
oha-mir-20b MI0031400 - AZIM01002644.1 179551 179635 + -
oha-mir-20a MI0031410 - AZIM01002132.1 157971 158048 - -



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