Stem-loop ptr-mir-18a

Accession

MI0002996

Description

Pan troglodytes ptr-mir-18a precursor miRNA

Literature search

3 open access papers mention ptr-mir-18a
(4 sentences)

Sequence

166 reads, 3.0 reads per million, 23 experiments

uguucUAAGGUGCAUCUAGUGCAGAUAGUgaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGGca
((((..((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..))))

Structure

    cU    U    C   U    A   -  aa u 
uguu  AAGG GCAU UAG GCAG UAG Ug  g a
||||  |||| |||| ||| |||| ||| ||  | g
acGG  UUCC CGUG AUC CGUC Auc ac  u a
    UC    U    A   C    -   u  ga u 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 77006857-77006927 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-18a

Mature ptr-miR-18a-5p

• Accession: MIMAT0002695
• Description: Pan troglodytes ptr-miR-18a-5p mature miRNA
• Sequence: 6 - UAAGGUGCAUCUAGUGCAGAUAGU - 29
• Evidence: not_experimental

Mature ptr-miR-18a-3p

• Accession: MIMAT0061156
• Description: Pan troglodytes ptr-miR-18a-3p mature miRNA
• Sequence: 47 - ACUGCCCUAAGUGCUCCUUCUGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24