Stem-loop rno-mir-106b

Accession

MI0000889

Description

Rattus norvegicus rno-mir-106b precursor miRNA

Literature search

26 open access papers mention rno-mir-106b
(161 sentences)

Sequence

78254 reads, 71 reads per million, 492 experiments

ccugcugggacUAAAGUGCUGACAGUGCAGAUagugguccucucugugcuaCCGCACUGUGGGUACUUGCUGCuccagcagg
(((((((((.(..(((((((.(((((((.....(((((.(.....).))))).))))))).)))))))...).)))))))))

Structure

         a -UA       G       AGAUa     c u 
ccugcuggg c   AAGUGCU ACAGUGC     guggu c c
||||||||| |   ||||||| |||||||     ||||| | u
ggacgaccu G   UUCAUGG UGUCACG     Caucg g c
         C UCG       G       ----C     u u 

Annotation confidence High

Genome context

chr12: 19307752-19307833 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-106b

Mature rno-miR-106b-5p

• Accession: MIMAT0000825
• Description: Rattus norvegicus rno-miR-106b-5p mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAU - 32
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-106b-3p

• Accession: MIMAT0004727
• Description: Rattus norvegicus rno-miR-106b-3p mature miRNA
• Sequence: 52 - CCGCACUGUGGGUACUUGCUGC - 73
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249