Stem-loop gga-mir-20a

Accession

MI0001181

Description

Gallus gallus gga-mir-20a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

12 open access papers mention gga-mir-20a
(46 sentences)

Sequence

118203 reads, 1774 reads per million, 5 experiments

ugacagcucuuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguucacuAAUCUACUGCAUUAUAAGCACUUAAAGUacugcuagcuguagaacuaca
..((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))).........

Structure

-------ug      cuu    c   -A                 G   uguu 
         acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    c
         ||||||   |||| |||  ||||||||||||||||| |||    a
         ugucga   cguc UGA  UUCACGAAUAUUACGUC AUC    c
acaucaaga      --u    a   AA                 -   UAAu 

Annotation confidence High

Genome context

chr1: 148023499-148023596 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-20a

Mature gga-miR-20a-5p

• Accession: MIMAT0001111
• Description: Gallus gallus gga-miR-20a-5p mature miRNA
• Sequence: 19 - UAAAGUGCUUAUAGUGCAGGUAG - 41
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-20a-3p

• Accession: MIMAT0026497
• Description: Gallus gallus gga-miR-20a-3p mature miRNA
• Sequence: 50 - AAUCUACUGCAUUAUAAGCACUUAAAGU - 77
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45