miRBase entry: 18256158

MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs

PubMed ID 18256158
Authors "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
Journal "J Virol
Volume 82
Pages 4007-4015

There are 63 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
gga-mir-29b-1 MI0001167 238 chr1 3433759 3433839 + High
gga-let-7i MI0001168 753 chr1 33060797 33060880 + High
gga-mir-33-1 MI0001170 294 chr1 49529873 49529941 - High
gga-let-7a-3 MI0001171 73726 chr1 71291481 71291556 + High
gga-mir-222a MI0001177 415 chr1 110650030 110650127 + High
gga-mir-221 MI0001178 930 chr1 110650534 110650632 + High
gga-mir-92-1 MI0001179 1297 chr1 148023263 148023340 - High
gga-mir-19b MI0001180 125 chr1 148023376 148023462 - High
gga-mir-20a MI0001181 1777 chr1 148023499 148023596 - High
gga-mir-19a MI0001182 109 chr1 148023685 148023765 - High
gga-mir-18a MI0001183 127 chr1 148023819 148023911 - High
gga-mir-17 MI0001184 961 chr1 148023974 148024058 - High
gga-mir-16-1 MI0001185 392 chr1 169399051 169399134 - High
gga-mir-15a MI0001186 73 chr1 169399193 169399275 - -
gga-mir-26a MI0001187 8541 chr2 4575294 4575370 + High
gga-mir-30d MI0001198 16716 chr2 142761260 142761323 - High
gga-mir-30b MI0001199 267 chr2 142757715 142757801 - High
gga-mir-30a MI0001204 21107 chr3 82629084 82629155 + High
gga-mir-30c-2 MI0001205 1744 chr3 82653698 82653769 + High
gga-mir-18b MI0001209 27 chr4 3995020 3995103 - -
gga-mir-106 MI0001210 190 chr4 3995151 3995231 - High
gga-mir-181a-1 MI0001218 15585 chr8 2005169 2005272 + High
gga-mir-181b-1 MI0001219 2028 chr8 2005358 2005446 + High
gga-mir-16-2 MI0001222 387 chr9 22276898 22276991 - High
gga-mir-15b MI0001223 27 chr9 22277073 22277163 - -
gga-mir-7-2 MI0001226 440 chr10 13134720 13134818 - High
gga-mir-140 MI0001229 10668 chr11 19310301 19310395 + High
gga-let-7a-1 MI0001234 72969 chr12 6092517 6092606 - High
gga-mir-301a MI0001240 13 chr15 406743 406835 - High
gga-mir-130a MI0001241 115 chr15 407968 408050 - High
gga-mir-181b-2 MI0001242 2007 chr17 9983772 9983856 + High
gga-mir-181a-2 MI0001243 15346 chr17 9982132 9982222 + -
gga-mir-34a MI0001251 50 chr21 3262992 3263100 - -
gga-mir-30c-1 MI0001257 2036 chr23 4947355 4947443 + High
gga-let-7a-2 MI0001259 72699 chr24 3343196 3343267 + High
gga-mir-29b-2 MI0001266 253 chr26 2699722 2699801 - High
gga-mir-7-3 MI0001269 442 chr28 4892799 4892893 - High
gga-mir-101-1 MI0001270 21064 chrZ 27510654 27510732 + High
gga-mir-7-1 MI0001272 460 chrZ 40078117 40078225 - High
gga-mir-23b MI0001273 268 chrZ 41649166 41649251 + High
gga-mir-27b MI0001274 1634 chrZ 41649402 41649498 + High
gga-mir-24 MI0001275 1785 chrZ 41649935 41650002 + High
gga-mir-142 MI0001281 1347 chr19 510413 510500 - High
gga-mir-20b MI0001517 396 chr4 3994839 3994923 - High
gga-mir-146b MI0003695 4181 chr6 23143386 23143490 + High
gga-mir-21 MI0004994 34970 chr19 7376247 7376343 + High
gga-mir-456 MI0004997 43 chr3 31514576 31514687 - -
mdv1-mir-M1 MI0005093 None AF243438.1 4681 4756 - -
mdv1-mir-M2 MI0005094 None AF243438.1 7324 7397 - -
mdv1-mir-M3 MI0005095 None AF243438.1 7476 7545 - -
mdv1-mir-M4 MI0005096 None AF243438.1 7192 7257 - -
mdv1-mir-M5 MI0005097 None AF243438.1 7945 8019 - -
mdv1-mir-M6 MI0005098 None AF243438.1 142321 142440 + -
mdv1-mir-M7 MI0005099 None AF243438.1 142501 142620 + -
mdv1-mir-M8 MI0005100 None AF243438.1 142201 142320 + -
gga-mir-22 MI0006982 988 chr19 5380348 5380447 - High
gga-mir-454 MI0006984 51 chr15 400264 400384 - -
mdv1-mir-M9 MI0006987 None AF243438.1 8182 8251 - -
mdv1-mir-M10 MI0006988 None AF243438.1 142625 142693 + -
mdv1-mir-M11 MI0006989 None AF243438.1 5506 5570 - -
mdv1-mir-M12 MI0006990 None AF243438.1 7671 7732 - -
mdv1-mir-M13 MI0006991 None AF243438.1 176107 176167 - -
gga-mir-101-2 MI0007558 20517 chr8 28360430 28360505 - High



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