Stem-loop gga-mir-18a

Accession

MI0001183

Description

Gallus gallus gga-mir-18a precursor miRNA mir-17

Gene
family

RF00051; mir-17

Literature search

11 open access papers mention gga-mir-18a
(20 sentences)

Sequence

8707 reads, 124 reads per million, 5 experiments

gugcuuuuuguacUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguuauguc
((((.....)))).((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..(((((((....)))))))

Structure

------gugcuuuuuguacU    U    C   U    A   -  aa u 
                    AAGG GCAU UAG GCAG UAg ug  g a
                    |||| |||| ||| |||| ||| ||  | g
                    UUCC CGUG AUC CGUC Auc ac  u a
cuguauugaagaauacgGUC    U    A   C    -   u  ga u 

Annotation confidence Medium

Genome context

chr1: 148023819-148023911 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-18a

Mature gga-miR-18a-5p

• Accession: MIMAT0001113
• Description: Gallus gallus gga-miR-18a-5p mature miRNA
• Sequence: 14 - UAAGGUGCAUCUAGUGCAGAUA - 35
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-18a-3p

• Accession: MIMAT0026499
• Description: Gallus gallus gga-miR-18a-3p mature miRNA
• Sequence: 55 - ACUGCCCUAAGUGCUCCUUCUG - 76
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45