Stem-loop gga-mir-222a

Accession

MI0001177

Description

Gallus gallus gga-mir-222a precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

21 open access papers mention gga-mir-222a
(171 sentences)

Sequence

4403873 reads, 2802.0 reads per million, 260 experiments

uguaguugcccaucaauCGCUCAGUAGUCAGUGUAGAUUCugucuuuacaaucagcAGCUACAUCUGGCUACUGGGUCUCUGaugacaucucauaucu
((.((.((..(((((...((((((((((((((((((...(((..........)))...))))).)))))))))))))...))))).)).)))).....

Structure

-----  u  u  cc     auC             -     AUU   ucuu 
     ug ag ug  cauca   GCUCAGUAGUCAG UGUAG   Cug    u
     || || ||  |||||   ||||||||||||| |||||   |||     
     ac uc ac  guaGU   UGGGUCAUCGGUC ACAUC   gac    a
ucuau  -  u  -a     CUC             U     GAc   uaac 

Annotation confidence High

Genome context

1: 110728187-110728284 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-222a

Mature gga-miR-222a-5p

• Accession: MIMAT0061066
• Description: Gallus gallus gga-miR-222a-5p mature miRNA
• Sequence: 18 - CGCUCAGUAGUCAGUGUAGAUUC - 40
• Evidence: experimental ; Illumina [1]

Mature gga-miR-222a-3p

• Accession: MIMAT0001107
• Description: Gallus gallus gga-miR-222a-3p mature miRNA
• Sequence: 57 - AGCUACAUCUGGCUACUGGGUCUCUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: