Stem-loop gga-let-7a-2

Accession

MI0001259

Description

Gallus gallus gga-let-7a-2 precursor miRNA

Literature search

53 open access papers mention gga-let-7a-2
(280 sentences)

Sequence

6140200 reads, 72689 reads per million, 5 experiments

agguUGAGGUAGUAGGUUGUAUAGUUuagaauuacaccaagggagauaaCUGUACAACCUCCUAGCUUUCCu
(((..(((.(((.(((((((((((((.....................))))))))))))).))).))).)))

Structure

   uU   G   U             uagaauuac 
agg  GAG UAG AGGUUGUAUAGUU         a
|||  ||| ||| |||||||||||||         c
uCC  UUC AUC UCCAACAUGUCaa         c
   -U   G   C             uagagggaa 

Annotation confidence High

Genome context

chr24: 3343196-3343267 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-let-7a-2

Mature gga-let-7a-5p

• Accession: MIMAT0001101
• Description: Gallus gallus gga-let-7a-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-let-7a-2-3p

• Accession: MIMAT0031037
• Description: Gallus gallus gga-let-7a-2-3p mature miRNA
• Sequence: 50 - CUGUACAACCUCCUAGCUUUCC - 71
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45