miRBase entry: aca-mir-20a

Stem-loop aca-mir-20a

Accession

MI0018812

Description

Anolis carolinensis aca-mir-20a precursor miRNA

Sequence

ccuguagcacUAAAGUGCUUAUAGUGCAGGUAgugauuaauaaucuACUGCAUUACGAGCACUUAAAGUacugcuagcugua
...((((.(((.((((((((.((((((((.(((...........))))))))))).))))))))..))).))))........

Structure

-----ccu    c   -A        A        G   ugau 
        guag acU  AAGUGCUU UAGUGCAG UAg    u
        |||| |||  |||||||| |||||||| |||    a
        cguc UGA  UUCACGAG AUUACGUC Auc    a
augucgau    a   AA        C        -   uaau

Annotation confidence Not enough data

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Genome context

GL343584.1: 108689-108770 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from aca-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-20a-5p

Accession	MIMAT0021861
Description	Anolis carolinensis aca-miR-20a-5p mature miRNA
Sequence	11 - UAAAGUGCUUAUAGUGCAGGUA - 32
Evidence	experimental Illumina [1]

Mature aca-miR-20a-3p

Accession	MIMAT0021862
Description	Anolis carolinensis aca-miR-20a-3p mature miRNA
Sequence	47 - ACUGCAUUACGAGCACUUAAAGU - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107