Stem-loop tch-mir-17

Accession

MI0031174

Description

Tupaia chinensis tch-mir-17 precursor miRNA

Sequence

15991 reads, 53.0 reads per million, 30 experiments

CAAAGUGCUUACAGUGCAGGUAGUGauaugugcaucuaCUGCAGUGAAGGCACUUGUAGC
..((((((((.((.(((((.(((((.......)).)))))))).)).)))))))).....

Structure

---CA        A  G     G   -  au 
     AAGUGCUU CA UGCAG UAG UG  a
     |||||||| || ||||| ||| ||  u
     UUCACGGA GU ACGUC auc ac  g
CGAUG        A  G     -   u  gu 

Annotation confidence High

Genome context

KB320410.1: 3473178-3473237 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from tch-mir-17

Mature tch-miR-17-5p

• Accession: MIMAT0036516
• Description: Tupaia chinensis tch-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAGUG - 25
• Evidence: experimental ; Illumina [1]

Mature tch-miR-17-3p

• Accession: MIMAT0059038
• Description: Tupaia chinensis tch-miR-17-3p mature miRNA
• Sequence: 39 - CUGCAGUGAAGGCACUUGUAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254