Stem-loop chi-mir-20b

Accession

MI0030687

Description

Capra hircus chi-mir-20b precursor miRNA

Literature search

22 open access papers mention chi-mir-20b
(126 sentences)

Sequence

2049 reads, 6.0 reads per million, 36 experiments

aguacCAAAGUGCUCACAGUGCAGGUAGuuuuggcaacauUCUACUGUAGUGUGGGCACUUccaguacucuugga
(((((..(((((((((((.(((((.(((...((....))..)))))))).)))))))))))...)))))......

Structure

------     -CA           G     G   uuu  g 
      aguac   AAGUGCUCACA UGCAG UAG   ug c
      |||||   ||||||||||| ||||| |||   ||  
      ucaug   UUCACGGGUGU AUGUC AUC   ac a
agguuc     acc           G     -   -Uu  a 

Annotation confidence Medium

Genome context

chrX: 40075091-40075165 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-20b

Mature chi-miR-20b-5p

• Accession: MIMAT0036056
• Description: Capra hircus chi-miR-20b-5p mature miRNA
• Sequence: 6 - CAAAGUGCUCACAGUGCAGGUAG - 28
• Evidence: experimental ; Illumina [1]

Mature chi-miR-20b-3p

• Accession: MIMAT0058954
• Description: Capra hircus chi-miR-20b-3p mature miRNA
• Sequence: 41 - UCUACUGUAGUGUGGGCACUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40