Stem-loop pma-mir-20a

Accession

MI0017022

Description

Petromyzon marinus pma-mir-20a precursor miRNA

Sequence

cugcccacagggugcCAAAGUGCUUAUAGUGCAGGUAGuugaucuuagucuACUGCAUUUUGAGCACUUGUAGCaccagguguggaaaaac
...(((((..(((((..(((((((((.(((((((.((((((....))).)))))))))).)))))))))...)))))..))).))......

Structure

---cug  -   ag     -CA         U       G   -   a 
      cc cac  ggugc   AAGUGCUUA AGUGCAG UAG uug u
      || |||  |||||   ||||||||| ||||||| ||| |||  
      gg gug  ccaCG   UUCACGAGU UUACGUC Auc gau c
caaaaa  u   ga     AUG         U       -   u   u 

Annotation confidence Not enough data

Genome context

GL478379.1: 406609-406699 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from pma-mir-20a

Mature pma-miR-20a-5p

• Accession: MIMAT0019395
• Description: Petromyzon marinus pma-miR-20a-5p mature miRNA
• Sequence: 16 - CAAAGUGCUUAUAGUGCAGGUAG - 38
• Evidence: experimental ; 454 [1]

Mature pma-miR-20a-3p

• Accession: MIMAT0019396
• Description: Petromyzon marinus pma-miR-20a-3p mature miRNA
• Sequence: 52 - ACUGCAUUUUGAGCACUUGUAGC - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383