Stem-loop chi-mir-20a

Accession

MI0030686

Description

Capra hircus chi-mir-20a precursor miRNA

Literature search

54 open access papers mention chi-mir-20a
(234 sentences)

Sequence

47120 reads, 145.0 reads per million, 36 experiments

gugugacgugacagcuucuguagcacUAAAGUGCUUAUAGUGCAGGUAGUGuuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugcuagcuguagaacuccag
.((.((.((.((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).))))))...)))))).

Structure

g  u  c  --g      ucu    c   -A                 G   UGuu 
 ug ga gu   acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    u
 || || ||   ||||||   |||| |||  ||||||||||||||||| |||    a
 ac cu ca   ugucga   cguc UGA  UUCACGAGUAUUACGUC Auc    g
g  -  -  aga      --u    a   AA                 -   uauu 

Annotation confidence High

Genome context

chr12: 66729906-66730012 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from chi-mir-20a

Mature chi-miR-20a-5p

• Accession: MIMAT0036054
• Description: Capra hircus chi-miR-20a-5p mature miRNA
• Sequence: 27 - UAAAGUGCUUAUAGUGCAGGUAGUG - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-20a-3p

• Accession: MIMAT0036055
• Description: Capra hircus chi-miR-20a-3p mature miRNA
• Sequence: 63 - ACUGCAUUAUGAGCACUUAAAGU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40