Stem-loop ptr-mir-17

Accession

MI0002995

Description

Pan troglodytes ptr-mir-17 precursor miRNA

Literature search

17 open access papers mention ptr-mir-17
(53 sentences)

Sequence

5626 reads, 86.0 reads per million, 24 experiments

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUAGcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacG   UUCACGGA GU ACGUC Auc ac  g
    gg       AUG        A  G     -   u  gu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 77006711-77006794 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptr-mir-17

Mature ptr-miR-17-5p

• Accession: MIMAT0002693
• Description: Pan troglodytes ptr-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
• Evidence: not_experimental

Mature ptr-miR-17-3p

• Accession: MIMAT0002694
• Description: Pan troglodytes ptr-miR-17-3p mature miRNA
• Sequence: 51 - ACUGCAGUGAAGGCACUUGUAG - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24