Stem-loop oha-mir-20b

Accession

MI0031400

Description

Ophiophagus hannah oha-mir-20b precursor miRNA

Sequence

uccuggcagggccAAAGUGCUCAUAGUGCAGGUAguuguggagccaaauucuACUGUAAUGUGGGCACUUCCAguccugcuggau
(((.((((((((..(((((((((((.(((((.(((...((....))....)))))))).)))))))))))...))))))))))).

Structure

-   u        -cA           G     G   -uug  g 
 ucc ggcagggc   AAGUGCUCAUA UGCAG UAg    ug a
 ||| ||||||||   ||||||||||| ||||| |||    ||  
 agg ucguccug   UUCACGGGUGU AUGUC Auc    ac g
u   -        ACC           A     -   uuaa  c 

Annotation confidence Not enough data

Genome context

AZIM01002644.1: 179551-179635 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oha-mir-20b

Mature oha-miR-20b-5p

• Accession: MIMAT0036805
• Description: Ophiophagus hannah oha-miR-20b-5p mature miRNA
• Sequence: 14 - AAAGUGCUCAUAGUGCAGGUA - 34
• Evidence: not_experimental

Mature oha-miR-20b-3p

• Accession: MIMAT0036806
• Description: Ophiophagus hannah oha-miR-20b-3p mature miRNA
• Sequence: 53 - ACUGUAAUGUGGGCACUUCCA - 73
• Evidence: not_experimental

References

1. PubMed ID: 24297900
   The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
   "Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
   "Proc Natl Acad Sci U S A (2013) 110:20651-20656