Stem-loop sha-mir-93

Accession

MI0019647

Description

Sarcophilus harrisii sha-mir-93 precursor miRNA

Sequence

auccuaggucucaucagucuuggggggcucCAAAGUGCUGUUCGUGCAGGUaguguaauaacccaaccuacugcugagcuagcacuucucgagccccuaagacacuaggccccuggaauuccuaggauccaaaccuguuuguuuuuccuu
((((((((........((((((((((.(((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))))).((((....))))....))))))))......................

Structure

----------------------        ---------ucucauca          g   -CA       -     U    G   u  aau 
                      auccuagg                 gucuuggggg cuc   AAGUGCU GUUCG GCAG Uag gu   a
                      ||||||||                 |||||||||| |||   ||||||| ||||| |||| ||| ||   a
                      uaggaucc                 cagaaucccc gag   uucacga cgagu cguc auc ca   c
uuccuuuuuguuuguccaaacc        uuaagguccccggauca          -   cuc       u     -    -   -  acc 

Annotation confidence Not enough data

Genome context

GL856864.1: 887817-887966 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sha-mir-93

Mature sha-miR-93

• Accession: MIMAT0022819
• Description: Sarcophilus harrisii sha-miR-93 mature miRNA
• Sequence: 31 - CAAAGUGCUGUUCGUGCAGGU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87