Stem-loop ptr-mir-20b

Accession

MI0008579

Description

Pan troglodytes ptr-mir-20b precursor miRNA

Literature search

4 open access papers mention ptr-mir-20b
(5 sentences)

Sequence

431 reads, 5.0 reads per million, 21 experiments

aguacCAAAGUGCUCAUAGUGCAGGUAGUuuuggcaugacucuACUGUAGUAUGGGCACUUCCAGUac
.((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))

Structure

a    -CA           G     -GU    uu 
 guac   AAGUGCUCAUA UGCAG   AGUu  g
 ||||   ||||||||||| |||||   ||||  g
 caUG   UUCACGGGUAU AUGUC   ucag  c
-    ACC           G     Auc    ua 

Annotation confidence High

Genome context

chrX: 134038030-134038097 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ptr-mir-20b

Mature ptr-miR-20b-5p

• Accession: MIMAT0008069
• Description: Pan troglodytes ptr-miR-20b-5p mature miRNA
• Sequence: 6 - CAAAGUGCUCAUAGUGCAGGUAGU - 29
• Evidence: not_experimental

Mature ptr-miR-20b-3p

• Accession: MIMAT0052315
• Description: Pan troglodytes ptr-miR-20b-3p mature miRNA
• Sequence: 44 - ACUGUAGUAUGGGCACUUCCAGU - 66
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70