Stem-loop ssc-mir-20b-1

Accession

MI0022124

Description

Sus scrofa ssc-mir-20b-1 precursor miRNA

Literature search

12 open access papers mention ssc-mir-20b-1
(23 sentences)

Sequence

14 reads, 8 reads per million, 5 experiments

ccggcaguacCAAAGUGCUCACAGUGCAGGUAGguuuugcauuacucuacuguagugugggcacuuccaguacucuugga
((((.(((((..(((((((((((.(((((.(((((........)).)))))))).)))))))))))...))))).)))).

Structure

-    c     -CA           G     G   -  uuu 
 ccgg aguac   AAGUGCUCACA UGCAG UAG gu   g
 |||| |||||   ||||||||||| ||||| ||| ||    
 gguu ucaug   uucacgggugu auguc auc ca   c
a    c     acc           g     -   u  uua 

Annotation confidence Not enough data

Genome context

chrX: 126199775-126199854 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ssc-mir-20b-1

Mature ssc-miR-20b

• Accession: MIMAT0025359
• Description: Sus scrofa ssc-miR-20b mature miRNA
• Sequence: 11 - CAAAGUGCUCACAGUGCAGGUAG - 33
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100