miRBase entry: ssc-mir-20b-1

Stem-loop ssc-mir-20b-1


Accession
MI0022124
Description
Sus scrofa ssc-mir-20b-1 precursor miRNA

Literature search
12 open access papers mention ssc-mir-20b-1
(23 sentences)

Sequence

14 reads, 25 reads per million, 5 experiments
ccggcaguacCAAAGUGCUCACAGUGCAGGUAGguuuugcauuacucuacuguagugugggcacuuccaguacucuugga
((((.(((((..(((((((((((.(((((.(((((........)).)))))))).)))))))))))...))))).)))).

Structure
-    c     -CA           G     G   -  uuu 
 ccgg aguac   AAGUGCUCACA UGCAG UAG gu   g
 |||| |||||   ||||||||||| ||||| ||| ||    
 gguu ucaug   uucacgggugu auguc auc ca   c
a    c     acc           g     -   u  uua 


Annotation confidence Not enough data
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Genome context
chrX: 126199775-126199854 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-20b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-20b

Accession MIMAT0025359
Description Sus scrofa ssc-miR-20b mature miRNA
Sequence 11 - CAAAGUGCUCACAGUGCAGGUAG - 33
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100