Stem-loop eca-mir-106a

Accession

MI0012942

Description

Equus caballus eca-mir-106a precursor miRNA

Literature search

8 open access papers mention eca-mir-106a
(9 sentences)

Sequence

174885 reads, 872.0 reads per million, 209 experiments

ccuuggccauguCAAAGUGCUUACAGUGCAGGUAGcuuucugagaucuACUGCAAUGCAAGCACUUCUUACauuaccaugg
((.(((..((((..((((((((.((.(((((.(((.(((...))).)))))))).)).))))))))...))))..))).))

Structure

  u   cc    -CA        A  G     G   c   c 
cc ugg  augu   AAGUGCUU CA UGCAG UAG uuu  
|| |||  ||||   |||||||| || ||||| ||| ||| u
gg acc  uaCA   UUCACGAA GU ACGUC Auc aga  
  u   au    UUC        C  A     -   u   g 

Annotation confidence High

Genome context

X: 110759183-110759263 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-106a

Mature eca-miR-106a-5p

• Accession: MIMAT0013194
• Description: Equus caballus eca-miR-106a-5p mature miRNA
• Sequence: 13 - CAAAGUGCUUACAGUGCAGGUAG - 35
• Evidence: not_experimental

Mature eca-miR-106a-3p

• Accession: MIMAT0051480
• Description: Equus caballus eca-miR-106a-3p mature miRNA
• Sequence: 49 - ACUGCAAUGCAAGCACUUCUUAC - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131