Accession
MI0002038
Description
Danio rerio
dre-mir-200b precursor miRNA mir-8
Gene
family?
family?
RF00241;
mir-8
Literature search
17 open access papers mention dre-mir-200b
(284 sentences)
(284 sentences)
Sequence
26872
reads,
2577
reads per million, 11 experiments
gguagucgucucCAUCUUACGAGGCAGCAUUGGAuuucauuacuuuuucUAAUACUGCCUGGUAAUGAUGAugauugcugcc
((((((.(((..((((((((.((((((.((((((.............)))))).)))))).)))).))))..))).))))))
((((((.(((..((((((((.((((((.((((((.............)))))).)))))).)))).))))..))).))))))
Structure
c uc - G C uuuca
gguagu guc CAUC UUAC AGGCAG AUUGGA u
|||||| ||| |||| |||| |||||| |||||| u
ccgucg uag GUAG AAUG UCCGUC UAAUcu a
u uA U G A uuuuc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr23: 24072029-24072110 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dre-mir-200b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dre-miR-200b-3p
| Accession | MIMAT0001862 |
| Description | Danio rerio dre-miR-200b-3p mature miRNA |
| Sequence | 50 - UAAUACUGCCUGGUAAUGAUGA - 71 |
| Evidence |
experimental
cloned [1] |
| Database links |
|
| Predicted targets |
|
Mature dre-miR-200b-5p
| Accession | MIMAT0031985 |
| Description | Danio rerio dre-miR-200b-5p mature miRNA |
| Sequence | 13 - CAUCUUACGAGGCAGCAUUGGA - 34 |
| Evidence | not_experimental |
| Database links |
|
References
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