miRBase entry: dre-mir-203b

Stem-loop dre-mir-203b


Accession
MI0002041
Description
Danio rerio dre-mir-203b precursor miRNA mir-203
Gene
family?
RF00696; mir-203

Literature search
5 open access papers mention dre-mir-203b
(9 sentences)

Sequence

185182 reads, 11673 reads per million, 11 experiments
uccucuuuggccgAGUGGUUCUCAACAGUUCAACAguucuuuugaugauuGUGAAAUGUUCAGGACCACUUGaucagacgaagga
((((((((((.(((((((((((.((((.((((.(((((........))))))))).)))).))))))))))).))))).).))))

Structure
    - -     c           C    G    A     cuu 
uccu c uuugg cgAGUGGUUCU AACA UUCA CAguu   u
|||| | ||||| ||||||||||| |||| |||| |||||    
agga g agacu GUUCACCAGGA UUGU AAGU Guuag   u
    a c     a           C    A    -     uag 


Annotation confidence High
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Genome context
chr20: 27405878-27405962 [+]

Database links

Mature dre-miR-203b-5p

Accession MIMAT0003407
Description Danio rerio dre-miR-203b-5p mature miRNA
Sequence 14 - AGUGGUUCUCAACAGUUCAACA - 35
Evidence experimental
cloned [1]
Database links

Mature dre-miR-203b-3p

Accession MIMAT0001865
Description Danio rerio dre-miR-203b-3p mature miRNA
Sequence 51 - GUGAAAUGUUCAGGACCACUUG - 72
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293